- Basic information
- CohesinDB ID: CDBP00421304
- Locus: chr21-45625655-45625928
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 54%,
"15_Quies": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T2, ZSCAN5D, MYCN, ZFX, EZH2, ZBTB48, WT1, TET2, MAZ, ZNF736
- Target gene symbol (double-evidenced CRMs): PCBP3,COL6A2,CFAP410,PFKL,TSPEAR,TRPM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000175894,
ENSG00000183570,
ENSG00000142173,
- Related loop:
chr21:29675000-29700000~~chr21:45600000-45625000,
chr21:44325000-44350000~~chr21:45625000-45650000,
chr21:44475000-44500000~~chr21:45625000-45650000,
chr21:45600000-45625000~~chr21:46100000-46125000,
chr21:45625000-45650000~~chr21:45750000-45775000,
chr21:45625000-45650000~~chr21:46050000-46075000,
chr21:45625000-45650000~~chr21:46100000-46125000,