- Basic information
- CohesinDB ID: CDBP00421307
- Locus: chr21-45655005-45655566
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Data sourse: GSE138405, GSE206145-NatGen2015
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Cell type: Hela-Kyoto, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 68%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, MAFG, CEBPA, TOP2A, AFF4, SMAD3, MAFF, STAT1, FOXF1, FOXA1, BAHD1, HOXB13, SMARCC1, RELA, JUNB, ATF3, NFIC, MYC, AHR, ARID1B, NRF1, BACH1, PBX4, ARNT, GATA3, BATF3, BATF, STAT3, PBX3, TAL1, FOS, SUPT5H, NFE2, IKZF1, MED1, NR3C1, CEBPB, TEAD1, PIAS1, NFE2L2, TP53, C11orf30, NFKB1, NFE2L1, JUN, TCF12, MAFK, CTCF, EP300, SPI1, AR, GATA2, GATAD2B, FLI1, HSF1, RNF2, BRD4, ILF3, MRTFB, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): PCBP3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 0
- Related genes and loops