- Basic information
- CohesinDB ID: CDBP00421309
- Locus: chr21-45662607-45663432
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR000BSB, ENCSR000BLY, GSE105028, GSE25021, ENCSR000EDW, ENCSR000EFJ, ENCSR000DZP, ENCSR000EAC, GSE67783, ENCSR000BKV, GSE86191, GSE101921, ENCSR703TNG, ENCSR000EEG, ENCSR000BLS, ENCSR000ECE, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, ENCSR000BTQ, ENCSR167MTG, GSE129526, ENCSR000EDE, ENCSR153HNT, GSE68388, ENCSR000ECS, GSE38411
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Cell type: MCF-7, H1-hESC, HMEC, HCT-116, Hep-G2, GM12878, HeLa-S3, IMR-90, K-562, SK-N-SH, BCBL-1, Liver, HSPC, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"14_ReprPCWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, MAFG, MAFF, FOXA1, ZBTB33, BAHD1, HOXB13, ERG, HNRNPK, RUNX2, RAD21, STAT3, TAL1, FOS, SUPT5H, MYB, C11orf30, CTCF, MAFK, BAF155, AR, GATA2, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): PCBP3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops