- Basic information
- CohesinDB ID: CDBP00421310
- Locus: chr21-45668071-45668553
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Data sourse: ENCSR703TNG, GSE25021, GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 62%,
"9_Het": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA1, ZNF205, BAHD1, HNRNPK, RELA, CREBBP, AHR, MYC, HIF1A, GATA3, GABPA, NRIP1, SUPT5H, NCOA3, NR2F2, KDM5B, ESR1, GRHL2, TFAP2A, AR, DPF2, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): PCBP3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops