- Basic information
- CohesinDB ID: CDBP00421314
- Locus: chr21-45696519-45696831
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Data sourse: GSE67783, GSE72082
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Cell type: MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 73%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF384, NR3C1, ZSCAN5D, EZH2phosphoT487, TRIM28, ZNF84, ZNF534, EZH2, ZNF317, LMO2, WT1, AFF1, GRHL3, FOXA1, SETDB1, ZNF92, TCF12, SUPT5H
- Target gene symbol (double-evidenced CRMs): COL6A2,PCBP3,ADARB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000197381,
ENSG00000183570,
ENSG00000142173,
- Related loop:
chr21:45200000-45225000~~chr21:45675000-45700000,
chr21:45325000-45350000~~chr21:45675000-45700000,
chr21:45550000-45575000~~chr21:45700000-45725000,
chr21:45675000-45700000~~chr21:45800000-45825000,
chr21:45675000-45700000~~chr21:45875000-45900000,
chr21:45675000-45700000~~chr21:45900000-45925000,
chr21:45675000-45700000~~chr21:46050000-46075000,
chr21:45675000-45700000~~chr21:46100000-46125000,
chr21:45694422-45696402~~chr21:45819564-45821784,
chr21:45694441-45696331~~chr21:45819765-45821570,
chr21:45694441-45696331~~chr21:45879486-45881477,
chr21:45694513-45696084~~chr21:45819806-45821569,
chr21:45694552-45696040~~chr21:45819886-45821571,
chr21:45694618-45696100~~chr21:45818578-45821540,
chr21:45700000-45725000~~chr21:45900000-45925000,