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Basic information

CohesinDB ID: CDBP00421322

Locus: chr21-45721022-45721411

Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT

Cell type: K-562, Fibroblast, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 84% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 57%, "14_ReprPCWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, POU2F2, MYC, EGLN2, ZFX, MECOM, CTCF

Target gene symbol (double-evidenced CRMs): SLC19A1,PCBP3

Function elements

Human SNPs: .

Number of somatic mutations (coding): 1

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000173638, ENSG00000183570,

eachgene

Deatailed information for cohesin site CDBP00421322