- Basic information
- CohesinDB ID: CDBP00421330
- Locus: chr21-45741837-45742013
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Data sourse: ENCSR703TNG, ENCSR000EHX, ENCSR000BLY
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Cell type: MCF-7, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 55%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM25, PGR, NME2, XBP1, FOXA1, SUZ12, MLL4, ZFHX2, HNRNPK, HDGF, ZBTB5, ZNF444, ZNF273, ZSCAN4, TP63, ZNF467, MAF, TEAD1, TRIM28, BCLAF1, ESR1, OCA2, TP73, CTCF, MNT, LMO1, PAX8, ZNF410, ZNF512B, E2F1, EHMT2, TFAP2C, POU2F2, CHD8, BRD1, MYCN, ZNF263, POU5F1, TOP2A, CTBP1, ZSCAN21, DUX4, ZBTB48, SRF, DDX5, NBN, ERG2, ERG, MYC, RFX1, RAD21, GRHL3, FOXK2, GABPA, XRCC5, IKZF1, ZNF639, ARNTL, CEBPB, SRSF3, KMT2A, CREB1, EZH2, BMPR1A, GABPB1, SPI1, HDAC2, GATA2, SSRP1, FLI1, MRTFB, NCOA2, RUNX1, BCL6, SMC1A, CRY1, ZFX, POU4F2, TET2, ERG3, ZNF18, SMARCC1, CREBBP, NOTCH1, CDK6, NFIB, ARNT, TFDP1, FOS, CDK8, SCRT2, TFAP2A, PHIP, TCF3, GLIS2, STAG1, PPARG, ZNF207, FOXA2, ZNF600, GTF2B, WT1, ZBTB33, HOXB13, ZKSCAN1, YY1, RELA, TARDBP, MCM3, SP140, ZIC2, HIF1A, GATA3, TAL1, NRIP1, GATA1, ZNF143, HAND2, BCL11B, NR2F1, ZNF687, PKNOX1, TP53, ZNF334, AR, EGLN2, HSF1, BRD4, CLOCK, MAZ, TBX2, AHR
- Target gene symbol (double-evidenced CRMs): TRPM2,ADARB1,COL6A2,TSPEAR,FAM207A,FTCD,UBE2G2,PCBP3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000142185,
ENSG00000175894,
ENSG00000184787,
ENSG00000160256,
ENSG00000197381,
ENSG00000183570,
ENSG00000142173,
ENSG00000160282,
- Related loop:
chr21:44375000-44400000~~chr21:45725000-45750000,
chr21:44500000-44525000~~chr21:45725000-45750000,
chr21:44575000-44600000~~chr21:45725000-45750000,
chr21:44625000-44650000~~chr21:45725000-45750000,
chr21:44750000-44775000~~chr21:45725000-45750000,
chr21:44975000-45000000~~chr21:45725000-45750000,
chr21:45150000-45175000~~chr21:45725000-45750000,
chr21:45200000-45225000~~chr21:45725000-45750000,
chr21:45325000-45350000~~chr21:45725000-45750000,
chr21:45575000-45600000~~chr21:45725000-45750000,
chr21:45725000-45750000~~chr21:45875000-45900000,
chr21:45725000-45750000~~chr21:45900000-45925000,
chr21:45725000-45750000~~chr21:45925000-45950000,
chr21:45725000-45750000~~chr21:46050000-46075000,
chr21:45725000-45750000~~chr21:46100000-46125000,
chr21:45725000-45750000~~chr21:46125000-46150000,