- Basic information
- CohesinDB ID: CDBP00421361
- Locus: chr21-45816934-45824027
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
-
Cell type: GM2610, B-cell, Fibroblast, GM12890, BCBL-1, HFFc6, SNYDER, GM18505, MB157, GM12878, SK-N-SH, GM19193, MCF-7, Hela-Kyoto, HEK293T, HCAEC, OCI-AML-3, GM10847, SLK, GP5d, GM2630, HEKn, hLCL, IMR-90, GM18486, DKO, H1-hESC, Monocytes, CNCCs-H9ESC, HeLa-Tet-On, THP-1, HUES64, HeLa, BGO3, TC-71, Neutrophil, CVB-hiPSC, CVI-hiPSC, Liver, TC-32, H9-hESC, HeLa-S3, GM2255, GM18526, Lymphoblast, GM12891, GM2588, GBM39, GM19239, RT-112, Macrophage, GM12892, HCT-116, MCF-10A, Hep-G2, Neurons-H1, HUVEC, HSPC, HAP1, MDM, RH4, GM19240, HuCC-T1, RPE, HMEC, Ishikawa, Kelly, K-562, Leukemia-SEM, HUES9, GM19099, T-47D, HL-60, A-549, GM19238, CNCC-WT33iPSC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 84% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.122
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TES,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 30%,
"7_Enh": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, TRP47, PGR, MYCN, ZNF263, SOX2, ZFX, XBP1, GTF2B, WT1, ZBTB48, FOXA1, TET2, HNRNPK, RELA, CREBBP, NOTCH1, ATF3, MYC, ZBTB5, MCM3, SP140, GRHL3, HIF1A, ARNT, ZIC2, ZNF143, MITF, TRIM28, KMT2A, EZH2, LMO2, ESR1, OCA2, ZNF334, CTCF, USF1, PAX3-FOXO1, ZNF257, AR, HEXIM1, BRD4, MAZ, STAG1
- Target gene symbol (double-evidenced CRMs): ITGB2,ADARB1,FAM207A,ITGB2-AS1,COL18A1,PCBP3,SLC19A1,POFUT2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 40
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000160255,
ENSG00000227039,
ENSG00000160256,
ENSG00000197381,
ENSG00000186866,
ENSG00000182871,
ENSG00000173638,
ENSG00000183570,
- Related loop:
chr21:44325000-44350000~~chr21:45825000-45850000,
chr21:44925000-44950000~~chr21:45800000-45825000,
chr21:44950000-44975000~~chr21:45800000-45825000,
chr21:44950000-44975000~~chr21:45825000-45850000,
chr21:44975000-45000000~~chr21:45800000-45825000,
chr21:44975000-45000000~~chr21:45825000-45850000,
chr21:45125000-45150000~~chr21:45800000-45825000,
chr21:45125000-45150000~~chr21:45825000-45850000,
chr21:45136450-45139355~~chr21:45818438-45821813,
chr21:45136469-45139375~~chr21:45817787-45821574,
chr21:45139554-45141260~~chr21:45817765-45819179,
chr21:45139554-45141260~~chr21:45819453-45821601,
chr21:45139555-45141248~~chr21:45819512-45821569,
chr21:45139688-45141261~~chr21:45817813-45819059,
chr21:45139688-45141261~~chr21:45819215-45821572,
chr21:45139699-45141285~~chr21:45818578-45821611,
chr21:45139703-45141220~~chr21:45819757-45821509,
chr21:45139731-45141427~~chr21:45818438-45821813,
chr21:45139734-45141308~~chr21:45819513-45821757,
chr21:45139756-45141227~~chr21:45819438-45821567,
chr21:45139777-45141216~~chr21:45818539-45821603,
chr21:45139825-45141312~~chr21:45819878-45821577,
chr21:45150000-45175000~~chr21:45800000-45825000,
chr21:45200000-45225000~~chr21:45800000-45825000,
chr21:45275000-45300000~~chr21:45800000-45825000,
chr21:45275000-45300000~~chr21:45825000-45850000,
chr21:45291323-45293772~~chr21:45817787-45821574,
chr21:45291491-45294096~~chr21:45818200-45821818,
chr21:45291547-45293953~~chr21:45818438-45821813,
chr21:45291564-45293921~~chr21:45817873-45821737,
chr21:45291571-45293755~~chr21:45818578-45821611,
chr21:45291571-45294131~~chr21:45819046-45821833,
chr21:45291583-45293732~~chr21:45819758-45821568,
chr21:45291592-45293929~~chr21:45819288-45821635,
chr21:45291598-45293774~~chr21:45818539-45821603,
chr21:45291699-45293755~~chr21:45819453-45821601,
chr21:45291702-45294027~~chr21:45819878-45821577,
chr21:45291806-45293737~~chr21:45819512-45821569,
chr21:45291818-45293858~~chr21:45819958-45821534,
chr21:45291920-45293888~~chr21:45819854-45821495,
chr21:45291941-45293676~~chr21:45820016-45821418,
chr21:45300000-45325000~~chr21:45800000-45825000,
chr21:45325000-45350000~~chr21:45800000-45825000,
chr21:45350000-45375000~~chr21:45800000-45825000,
chr21:45425000-45450000~~chr21:45800000-45825000,
chr21:45425000-45450000~~chr21:45825000-45850000,
chr21:45438105-45440682~~chr21:45818484-45821583,
chr21:45438142-45440624~~chr21:45818578-45821611,
chr21:45438417-45440836~~chr21:45818438-45821813,
chr21:45443201-45445892~~chr21:45817782-45819362,
chr21:45443201-45445892~~chr21:45819577-45821553,
chr21:45443263-45444867~~chr21:45819855-45821550,
chr21:45443298-45445960~~chr21:45819441-45821575,
chr21:45443306-45446030~~chr21:45819676-45821573,
chr21:45443329-45444663~~chr21:45819512-45821569,
chr21:45443393-45444628~~chr21:45818578-45821611,
chr21:45450000-45475000~~chr21:45800000-45825000,
chr21:45450000-45475000~~chr21:45825000-45850000,
chr21:45477101-45479170~~chr21:45819453-45821601,
chr21:45477119-45480039~~chr21:45818200-45821818,
chr21:45477292-45479145~~chr21:45819438-45821567,
chr21:45477348-45479204~~chr21:45818578-45821611,
chr21:45477360-45479274~~chr21:45818438-45821813,
chr21:45477385-45479624~~chr21:45819513-45821757,
chr21:45477518-45479023~~chr21:45819894-45821572,
chr21:45477532-45479123~~chr21:45819958-45821534,
chr21:45477626-45479192~~chr21:45819992-45821424,
chr21:45525000-45550000~~chr21:45800000-45825000,
chr21:45541155-45542449~~chr21:45817765-45819179,
chr21:45550000-45575000~~chr21:45800000-45825000,
chr21:45550000-45575000~~chr21:45825000-45850000,
chr21:45554040-45556961~~chr21:45819765-45821570,
chr21:45554054-45556956~~chr21:45819564-45821784,
chr21:45554057-45556932~~chr21:45819425-45821578,
chr21:45554068-45556963~~chr21:45819485-45821586,
chr21:45554081-45557001~~chr21:45818578-45821611,
chr21:45554102-45556956~~chr21:45817765-45819179,
chr21:45554102-45556956~~chr21:45819453-45821601,
chr21:45554116-45557239~~chr21:45818438-45821813,
chr21:45554117-45556938~~chr21:45817776-45821570,
chr21:45554119-45557159~~chr21:45819878-45821577,
chr21:45554143-45556979~~chr21:45819215-45821572,
chr21:45554175-45556950~~chr21:45817789-45819456,
chr21:45554175-45556950~~chr21:45819855-45821550,
chr21:45554175-45557619~~chr21:45818200-45821818,
chr21:45554177-45557278~~chr21:45819574-45821739,
chr21:45554195-45556971~~chr21:45819288-45821635,
chr21:45554202-45556971~~chr21:45817787-45821574,
chr21:45554208-45555627~~chr21:45819441-45821575,
chr21:45554214-45557007~~chr21:45819894-45821572,
chr21:45554223-45557030~~chr21:45818468-45819723,
chr21:45554223-45557030~~chr21:45819958-45821534,
chr21:45554237-45556867~~chr21:45819438-45821567,
chr21:45554245-45556897~~chr21:45819932-45821531,
chr21:45554248-45557000~~chr21:45819512-45821569,
chr21:45554252-45557219~~chr21:45819046-45821833,
chr21:45554270-45556959~~chr21:45818484-45821583,
chr21:45554282-45557370~~chr21:45817873-45821737,
chr21:45554287-45556968~~chr21:45817782-45819362,
chr21:45554287-45556968~~chr21:45819577-45821553,
chr21:45554290-45556966~~chr21:45819479-45821623,
chr21:45554297-45556971~~chr21:45817860-45821572,
chr21:45554297-45557117~~chr21:45817821-45819130,
chr21:45554297-45557117~~chr21:45819992-45821424,
chr21:45554301-45556961~~chr21:45818539-45821603,
chr21:45554301-45556971~~chr21:45818559-45821572,
chr21:45554314-45556966~~chr21:45819601-45821623,
chr21:45554319-45557073~~chr21:45819854-45821495,
chr21:45554322-45556956~~chr21:45817794-45819025,
chr21:45554322-45556956~~chr21:45819758-45821568,
chr21:45554329-45556937~~chr21:45819576-45821583,
chr21:45554331-45556939~~chr21:45818525-45821578,
chr21:45554345-45557074~~chr21:45820016-45821418,
chr21:45554359-45556990~~chr21:45819186-45821572,
chr21:45554362-45557128~~chr21:45819877-45821487,
chr21:45554367-45557069~~chr21:45817841-45819035,
chr21:45554367-45557069~~chr21:45819916-45821488,
chr21:45554407-45556897~~chr21:45819894-45821519,
chr21:45554407-45556976~~chr21:45819554-45821538,
chr21:45554441-45556961~~chr21:45819757-45821509,
chr21:45554476-45556827~~chr21:45820082-45821363,
chr21:45575000-45600000~~chr21:45800000-45825000,
chr21:45640683-45641855~~chr21:45817841-45819035,
chr21:45675000-45700000~~chr21:45800000-45825000,
chr21:45694422-45696402~~chr21:45819564-45821784,
chr21:45694441-45696331~~chr21:45819765-45821570,
chr21:45694513-45696084~~chr21:45819806-45821569,
chr21:45694552-45696040~~chr21:45819886-45821571,
chr21:45694618-45696100~~chr21:45818578-45821540,