- Basic information
- CohesinDB ID: CDBP00421384
- Locus: chr21-45883995-45884251
-
Data sourse: GSE67783, GSE86191
-
Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 38%,
"15_Quies": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF384, ZFX, WT1, BRD4, FOXA1, CTCF, MNT
- Target gene symbol (double-evidenced CRMs): ADARB1,PCBP3,SLC19A1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000197381,
ENSG00000173638,
ENSG00000183570,
- Related loop:
chr21:45125000-45150000~~chr21:45875000-45900000,
chr21:45139624-45141292~~chr21:45879491-45881481,
chr21:45139756-45141227~~chr21:45879726-45881542,
chr21:45139859-45141236~~chr21:45879927-45881351,
chr21:45291923-45293716~~chr21:45879919-45881338,
chr21:45325000-45350000~~chr21:45875000-45900000,
chr21:45477101-45479170~~chr21:45879575-45881506,
chr21:45550000-45575000~~chr21:45875000-45900000,
chr21:45554102-45556956~~chr21:45879575-45881506,
chr21:45554116-45557239~~chr21:45879498-45881495,
chr21:45554177-45557278~~chr21:45879491-45881481,
chr21:45554270-45556959~~chr21:45879684-45881506,
chr21:45554301-45556961~~chr21:45879697-45881735,
chr21:45554337-45556942~~chr21:45879710-45881470,
chr21:45554367-45557069~~chr21:45879927-45881351,
chr21:45675000-45700000~~chr21:45875000-45900000,
chr21:45694441-45696331~~chr21:45879486-45881477,
chr21:45725000-45750000~~chr21:45875000-45900000,
chr21:45750000-45775000~~chr21:45875000-45900000,
chr21:45846155-45847509~~chr21:45879483-45881988,
chr21:45847135-45849106~~chr21:45879481-45881522,
chr21:45847189-45849001~~chr21:45879514-45881583,
chr21:45847196-45848957~~chr21:45879671-45881548,
chr21:45847206-45849095~~chr21:45879694-45881570,
chr21:45875000-45900000~~chr21:46050000-46075000,
chr21:45879775-45881500~~chr21:45922251-45924201,