- Basic information
- CohesinDB ID: CDBP00421398
- Locus: chr21-45927607-45933291
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Data sourse: GSE67783, GSE86191, GSE98367, GSE206145-NatGen2015, GSE120943, ENCSR153HNT, GSE131606
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Cell type: Fibroblast, HCT-116, Monocytes, K-562, HSPC, Macrophage, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 39%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, E2F7, XBP1, SUZ12, ZFHX2, HNRNPK, ATF3, PRDM1, CBFB, TP63, MITF, ZNF320, TEAD1, TRIM28, ESR1, OCA2, CTCF, JUN, TCF12, MNT, IRF4, E2F4, SMC1, ZNF175, TFAP2C, GLIS1, POU2F2, BRD1, ZNF263, MYCN, POU5F1, ZBTB48, ZSCAN5A, STAT1, ERG2, SP4, ERG, OGG1, MYC, RFX1, RAD21, GRHL3, BATF3, GABPA, STAT3, DNMT3B, NR3C1, CREB1, EZH2, BMPR1A, KLF17, PCBP1, GATA2, MXD3, FLI1, ZNF490, MRTFB, RUNX1, ZFX, PCBP2, TET2, ERG3, ZBTB2, RARA, GR, ARNT, ATF2, CHD1, CDK8, FOS, KDM6B, ZNF331, EVI1, TBX5, STAT5A, SP1, REST, ZBTB7A, PHIP, GLIS2, TCF3, AATF, SMC3, STAG1, TRP47, FOXA2, AGO1, WT1, CDK9, HOXB13, KDM1A, YY1, RELA, JUNB, AHR, SP140, ZFP36, HIF1A, BATF, MAX, ZNF143, PLAG1, NCOA3, NR2F1, KDM5B, TP53, ZNF334, MYOD1, EGR2, BHLHE40, AR, RXR, HEXIM1, EGR1, TFIIIC, ZBTB26, HSF1, BRD4, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): COL18A1,PCBP3,SLC19A1,ADARB1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 816
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000197381,
ENSG00000182871,
ENSG00000173638,
ENSG00000183570,
- Related loop:
chr21:44250000-44275000~~chr21:45900000-45925000,
chr21:45025000-45050000~~chr21:45925000-45950000,
chr21:45125000-45150000~~chr21:45900000-45925000,
chr21:45139756-45141227~~chr21:45922568-45924115,
chr21:45200000-45225000~~chr21:45900000-45925000,
chr21:45200000-45225000~~chr21:45925000-45950000,
chr21:45325000-45350000~~chr21:45900000-45925000,
chr21:45325000-45350000~~chr21:45925000-45950000,
chr21:45450000-45475000~~chr21:45925000-45950000,
chr21:45550000-45575000~~chr21:45900000-45925000,
chr21:45550000-45575000~~chr21:45925000-45950000,
chr21:45554068-45556963~~chr21:45922226-45924254,
chr21:45554119-45557159~~chr21:45922696-45924013,
chr21:45554175-45557619~~chr21:45921603-45924257,
chr21:45554195-45556971~~chr21:45922191-45924230,
chr21:45554237-45556867~~chr21:45922568-45924115,
chr21:45554290-45556966~~chr21:45922251-45924201,
chr21:45575000-45600000~~chr21:45900000-45925000,
chr21:45575000-45600000~~chr21:45925000-45950000,
chr21:45675000-45700000~~chr21:45900000-45925000,
chr21:45700000-45725000~~chr21:45900000-45925000,
chr21:45725000-45750000~~chr21:45900000-45925000,
chr21:45725000-45750000~~chr21:45925000-45950000,
chr21:45750000-45775000~~chr21:45900000-45925000,
chr21:45847135-45849106~~chr21:45922544-45924186,
chr21:45879775-45881500~~chr21:45922251-45924201,
chr21:45900000-45925000~~chr21:46100000-46125000,
chr21:45900000-45925000~~chr21:46200000-46225000,