- Basic information
- CohesinDB ID: CDBP00421412
- Locus: chr21-45976610-45980161
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE67783, GSE86191, GSE98367, GSE111913, ENCSR000BLY, GSE105028, GSE206145-NatGen2015, ENCSR000ECE, GSE206145, GSE120943, ENCSR153HNT, GSE68388, GSE131606, GSE165895
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Cell type: MCF-7, H1-hESC, Macrophage, Fibroblast, HCT-116, Monocytes, RPE, DKO, RT-112, HSPC, SK-N-SH, K-562, HFFc6, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 24%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRIM25, FOXA1, RXRB, MLL4, KDM3A, ZBTB7B, HDGF, THAP1, IKZF3, ZNF320, TEAD1, ZNF121, OCA2, MED26, HDAC8, ZNF561, E4F1, ZNF157, SOX5, ZNF407, DEK, E2F4, ZNF528, KMT2B, GATAD2A, JARID2, NANOG, ZNF263, POU5F1, TOP2A, BRD3, CTBP1, STAT1, ZNF488, SAP130, ERG, ZBTB21, ZBTB8A, EZH1, SMARCA4, RFX1, TOP1, FOXK2, ZNF8, ZNF398, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, GABPB1, ZHX2, KLF17, ZNF257, GATA2, MXD3, FLI1, DRAP1, MXI1, HCFC1R1, RUNX1, HDAC1, NKX2-2, ZNF707, CRY1, REPIN1, ZNF473, SP5, SMARCC1, PRDM10, ZBTB2, ZBTB10, SNIP1, ATF2, SP2, SMARCB1, GMEB1, PIAS1, ARID2, IKZF5, RBM25, AFF1, MBD2, ELL2, NFATC3, CBFA2T2, CBX3, ZNF207, CREM, CHD2, SS18, NFATC1, WT1, NEUROD1, JUNB, MCM3, ZFP36, ZNF311, MAF1, PLAG1, ZFP69B, KLF4, BCL11B, ZNF544, ZBTB6, EGR2, ELF3, ARID4B, RXR, EGLN2, ZNF366, HSF1, NCOR1, ZBTB26, ILF3, FOSL1, ZNF660, ZNF621, XBP1, PBX2, ZNF596, HNRNPK, ATF3, THRB, ZFP64, RUNX3, CBFB, ZNF273, TP63, ZSCAN4, MITF, ZNF467, MAF, JMJD1C, ELF1, RBM39, SNAI2, KLF10, ZNF571, CTCF, TAF3, JUN, ZBTB20, MNT, DPF2, RYBP, IRF4, ZNF423, ZNF776, ZNF280A, TFAP2C, RBPJ, MLX, YBX1, ZNF239, ZSCAN21, ZBTB17, ZBTB48, MTA2, NONO, SRF, DDX5, NBN, PHB2, CHD4, KDM4A, TSHZ1, ZNF2, FOXP2, RXRA, PRDM14, MIER3, HNRNPH1, VDR, NR3C1, ESRRA, STAT5B, KMT2A, KLF8, ARHGAP35, GRHL2, ZNF565, EBF3, SSRP1, ZNF146, ZSCAN29, SMARCA5, CC2D1A, THAP11, EZH2phosphoT487, SOX13, AFF4, ZNF770, ZNF18, SP3, DAXX, NFIB, ARNT, ZNF48, ZEB2, NFYA, PBX3, NCAPH2, HMGXB4, TEAD3, DIDO1, ZXDB, KLF9, ZBTB18, SP1, BCL11A, ZNF479, ATF7, ASH2L, CTBP2, GLIS2, SMC3, STAG1, MLLT1, ZNF394, TRP47, SAFB, AGO1, MTA3, MAFF, ESR2, ZNF580, KLF7, BCL3, KDM1A, ZKSCAN1, BRG1, ZIC2, PCGF1, GATA3, KLF15, TAL1, NRIP1, ZNF143, MTA1, AGO2, TP53, ZNF645, ZNF334, ZSCAN22, ZNF140, BRD2, KAT8, RB1, TFIIIC, RNF2, BRD4, JUND, SPIN1, CUX1, ZSCAN23, TBX2, ZNF468, PGR, FANCL, SOX2, PATZ1, UBTF, BMI1, CHD7, ZNF444, MXD4, ZNF189, SMARCE1, KLF6, MCM7, NFE2L2, SAP30, ESR1, ZNF524, SND1, KLF1, ZNF695, SOX4, E2F6, TRIM24, GTF2F1, GLIS1, POU2F2, ZSCAN5D, KDM4C, ZBTB1, ZSCAN5A, ERG2, SP4, HIC1, TBP, HOXC5, OGG1, ETS1, MYC, ARID1B, KLF12, NKX2-1, GABPA, MCRS1, STAT3, IKZF1, DNMT3B, YBX3, EZH2, ZNF514, PHF8, SPI1, ZNF202, PCBP1, HDAC2, GATAD2B, ATM, ZNF76, ZNF554, NCOA2, ETV5, SALL2, BCL6, SIN3A, ERG3, NFXL1, CREBBP, ZNF35, NFYC, RARA, ZNF169, TAF15, SMAD4, CDK8, CSNK2A1, ZEB1, SUPT16H, NCOA1, SREBF2, ZNF22, REST, ARID1A, ZHX1, HNRNPLL, BCOR, AATF, CXXC4, PPARG, ZNF692, ZNF30, ZNF662, ZNF574, RELA, TARDBP, MGA, MAX, ZNF592, GFI1B, NR2F1, NEUROG2, KDM5B, PKNOX1, ZNF547, MYOD1, T, AR, ZNF324, HEXIM1, AHR, FOSL2, MBD3, DMAP1, HMG20A, HMGN3, MEIS2, SUZ12, RBFOX2, ZNF28, ZFHX2, INSM2, ZBTB5, CTCFL, PRDM1, ZNF629, KLF5, TRIM28, BCLAF1, ETV1, RCOR2, USF2, TCF12, EP300, BAF155, PRDM4, GLI4, RAD51, ZNF512B, E2F1, SMC1, TEAD4, FOXA3, EHMT2, ATRX, EED, CHD8, BRD1, MYCN, CDK7, ID3, RUNX1T1, GATAD1, MIER1, ZNF341, MCM5, RAD21, GRHL3, PROX1, XRCC5, ZNF614, ZNF639, HES1, TFE3, EHF, HBP1, IRF1, GTF3C5, ZGPAT, MRTFB, ATF1, PTBP1, SMC1A, CBX1, SIRT6, ZNF335, ZFX, ZNF534, FIP1L1, SMAD3, PCBP2, TWIST1, ZNF701, NOTCH1, RUNX2, ZSCAN30, GATA4, OSR2, ZNF184, PBX4, NRF1, FOS, CHD1, SUPT5H, MED1, ZNF558, MYB, SCRT2, CEBPD, KDM6B, VEZF1, ZNF3, L3MBTL2, SETDB1, NIPBL, PHF20, ZBTB7A, CCNT2, PHIP, TCF3, NELFA, ZNF283, NCOA4, KLF13, FOXA2, RBBP5, ZNF600, MIER2, ZBTB33, CDK9, HOXB13, YY1, ZNF148, ASXL1, ZNF610, SP140, HIF1A, ZNF519, GATA1, HAND2, CEBPG, SP7, NCOA3, ZNF512, ZNF687, BHLHE40, NFKBIZ, TAF1, ZBTB40, ZBTB42, CLOCK, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): COL6A1,FTCD,COL6A2
- Function elements
- Human SNPs: Pulse_pressure
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 24
- Related genes and loops
- Related gene:
ENSG00000142156,
ENSG00000142173,
ENSG00000160282,
- Related loop:
chr21:45950000-45975000~~chr21:46050000-46075000,
chr21:45950000-45975000~~chr21:46075000-46100000,
chr21:45950000-45975000~~chr21:46100000-46125000,
chr21:45950000-45975000~~chr21:46125000-46150000,
chr21:45950000-45975000~~chr21:46200000-46225000,
chr21:45969912-45971939~~chr21:46146852-46148242,
chr21:45969927-45971657~~chr21:46143028-46144654,
chr21:45969938-45971632~~chr21:46097212-46099767,
chr21:45972574-45974684~~chr21:46096717-46099725,
chr21:45972821-45974610~~chr21:46143050-46144647,
chr21:45972840-45974615~~chr21:46096634-46099688,
chr21:45972865-45974723~~chr21:46097212-46099767,
chr21:45972883-45974607~~chr21:46096709-46099711,
chr21:45972910-45974653~~chr21:46097148-46100727,
chr21:45972910-45974653~~chr21:46143028-46144654,
chr21:45973206-45974743~~chr21:46096706-46098645,
chr21:45973208-45974665~~chr21:46096817-46098665,
chr21:45975000-46000000~~chr21:46075000-46100000,
chr21:45975000-46000000~~chr21:46100000-46125000,
chr21:45975000-46000000~~chr21:46125000-46150000,
chr21:45980579-45983656~~chr21:46091541-46093549,
chr21:45981275-45983496~~chr21:46096634-46099688,
chr21:45981311-45983330~~chr21:46091781-46093342,