- Basic information
- CohesinDB ID: CDBP00421414
- Locus: chr21-46012151-46012523
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 58%,
"14_ReprPCWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, FOXO1, TRP47, POU2F2, CHD8, FOXA2, MYCN, CRY1, NFATC1, ZFX, NME2, XBP1, ZBTB48, WT1, PATZ1, FOXA1, DUX4, TET2, ERG3, BCL3, ZFHX2, ERG, YY1, RELA, ZNF35, ATF3, MYC, GATA4, SP140, ZIC2, HIF1A, ARNT, CBFB, GABPA, PBX3, ZSCAN4, NRIP1, ZNF143, CBX2, KLF5, TEAD3, TRIM28, NR2F1, EZH2, ZNF3, ESR1, TP53, TP73, ZNF334, HIF2A, CTCF, SPI1, MNT, AR, SSRP1, ZBTB7A, RFX5, HSF1, NR2C2, TCF3, CLOCK, MAZ, AATF, ZNF554, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): COL6A2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops