- Basic information
- CohesinDB ID: CDBP00421417
- Locus: chr21-46024976-46026027
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Data sourse: ENCSR000BTU, GSE138405, GSE206145-NatGen2015, GSE68388, GSE138105, GSE130135, GSE165895
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Cell type: Hela-Kyoto, Fibroblast, HEK293T, SLK, Ishikawa, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 38%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, E2F7, HMGN3, SOX2, XBP1, HNF1A, KDM4B, RBFOX2, PBX2, UBTF, ZNF90, ATF3, ZNF362, THAP1, CTCFL, CHD7, PRDM1, CBFB, DPF1, PAX5, TP63, MITF, TEAD1, ETV1, RBM39, ESR1, OCA2, HNF1B, TP73, HDAC8, USF2, CTCF, JUN, TCF12, KLF1, E4F1, MNT, ZNF260, E2F6, IRF4, E2F4, RAD51, ZNF528, TEAD4, PDX1, TFAP2C, CHD8, BRD1, ZSCAN5D, ZNF263, MYCN, TOP2A, ID3, KDM4C, CTBP1, POU5F1, ASH1L, ZBTB48, DUX4, STAT1, TBP, ERG, OGG1, MYC, TRIP13, SMARCA4, EZH1, ONECUT1, RAD21, GRHL3, RXRA, STAT3, XRCC5, PRDM14, IKZF1, RCOR1, DNMT3B, NFE2, NR3C1, CEBPB, CREB1, EZH2, GRHL2, GABPB1, PHF8, HDAC2, GATA2, ZNF146, SIX2, SREBF1, FLI1, HCFC1R1, NFYB, ATF1, PTBP1, RUNX1, CTNNB1, CBX1, SMC1A, CEBPA, SIRT6, HDAC1, CRY1, ZFX, NFKBIA, TET2, ERG3, SMARCC1, TWIST1, CREBBP, ZNF384, NFYC, IRF2, RARA, RUNX2, CDK6, ARNT, NRF1, PRDM9, NFYA, PBX3, NCAPH2, FOS, CDK8, SMARCB1, MED1, TEAD3, PML, DIDO1, TAF7, ZNF3, L3MBTL2, SETDB1, ZNF22, USF1, BCL11A, SP1, NR4A1, HNF4A, REST, ZBTB7A, RBM25, ATF7, HNRNPLL, MBD2, AATF, SMC3, STAG1, TRP47, CBFA2T2, AGO1, FOXA2, CBX3, TBL1X, CHD2, MTA3, CREM, RBBP5, GTF2B, WT1, ZBTB33, CDK9, CREB3L1, YY1, RELA, NEUROD1, JUNB, SP140, HIF1A, GATA3, MGA, MAX, ZNF143, PLAG1, NCOA3, NR2F2, NR2F1, KDM5B, TP53, ZNF334, BHLHE40, AR, ZBTB40, RXR, EGR1, RB1, HEXIM1, HSF1, RNF2, TFIIIC, BRD4, ILF3, JUND, MAZ, ZZZ3, AHR
- Target gene symbol (double-evidenced CRMs): FTCD,COL6A2
- Function elements
- Human SNPs: Alcoholism_(alcohol_dependence_factor_score)
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops