- Basic information
- CohesinDB ID: CDBP00421418
- Locus: chr21-46027808-46029515
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Data sourse: ENCSR000EFJ, ENCSR230ZWH, ENCSR917QNE, GSE206145-NatGen2015, ENCSR153HNT, GSE165895
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Cell type: Fibroblast, IMR-90, K-562, Liver, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 39%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, PGR, FOXA2, ZSCAN5D, E2F7, CBX3, ZNF317, GTF2B, FOXA1, FOXF1, HOXB13, TWIST1, YY1, ZBTB21, RELA, ATF3, RUNX2, NFIC, GATA4, ZNF280A, ZNF184, RAD21, ARID1B, ARNT, ZIC2, NFIB, RXRA, HMGB2, ATF2, GABPA, ZNF189, STAT3, MAX, PBX3, ZNF518A, FOS, ZNF143, RCOR1, GATA1, HAND2, MED1, ZNF320, IKZF1, NR3C1, CEBPB, ZNF629, SP7, NR2F2, ZNF558, TRIM28, CREB1, PIAS1, ZNF791, EZH2, SMAD1, ZNF680, GRHL2, ZNF334, ZSCAN22, SETDB1, CTCF, TCF12, USF1, SP1, BAF155, ZNF577, HNF4A, AR, BHLHE40, GATA2, REST, ZNF324, TRIM24, SIX2, BRD4, JUND, E2F1, MAZ, ZNF350, ZNF528, TEAD4, ZNF554
- Target gene symbol (double-evidenced CRMs): FTCD,COL6A2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 16
- Related genes and loops