- Basic information
- CohesinDB ID: CDBP00421421
- Locus: chr21-46043344-46043657
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Data sourse: GSE116344, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: K-562, Fibroblast, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 72%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CDC5L, NANOG, CHD8, POU5F1, TOP2A, SOX2, RAD21, SIN3A, CHD7, ARNT, SMAD3, ZBTB48, BCOR, WT1, ZNF770, STAT3, CTCF, AHR
- Target gene symbol (double-evidenced CRMs): FTCD,COL6A2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops