- Basic information
- CohesinDB ID: CDBP00421436
- Locus: chr21-46157182-46162882
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Data sourse: GSE206145-GSE177045, GSE67783, GSE86191, GSE110061, GSE25021, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE131606, GSE165895
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, DKO, K-562, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 34%,
"15_Quies": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF468, FOXO1, TRIM25, PGR, FOXA1, SUZ12, RBFOX2, LEO1, HNRNPK, ATF3, ZFP64, THAP1, KLF5, TEAD1, TRIM28, ESR1, USF2, CTCF, EP300, BAF155, TRIM24, E2F4, GTF2F1, RBPJ, GLIS1, BRD1, MYCN, ZNF263, POU5F1, ID3, ZBTB48, ERG, OGG1, ETS1, MYC, SMARCA4, RFX1, ZNF2, GRHL3, NKX2-1, GABPA, XRCC5, DNMT3B, NR3C1, SRSF3, HNRNPL, EZH2, GRHL2, GABPB1, ZHX2, ZNF202, ZNF257, PCBP1, SSRP1, RUNX1, SIRT6, FIP1L1, ZFX, ZNF534, SMAD3, PCBP2, ZNF770, ERG3, SMARCC1, PRDM10, PRPF4, ZNF384, TAF15, ZNF48, NCAPH2, FOS, SUPT5H, CHD1, TEAD3, ZEB1, ZNF3, SETDB1, RBM22, REST, ZBTB7A, HNRNPLL, TCF3, AATF, NFATC3, TRP47, FOXA2, AGO1, CBX3, CHD2, EBF1, ZNF600, WT1, ZNF30, ZBTB33, HOXB13, MPHOSPH8, KDM1A, YY1, RELA, TARDBP, ZNF148, NEUROD1, BRG1, SP140, KLF15, MAF1, MAX, AGO2, PLAG1, TP53, RUVBL1, ZNF334, AR, ZNF445, EGR1, TFIIIC, ZBTB26, BRD4, SCRT1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): FTCD,SPATC1L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 225
- Number of somatic mutations (non-coding): 20
- Related genes and loops