- Basic information
- CohesinDB ID: CDBP00421439
- Locus: chr21-46169153-46171141
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Data sourse: GSE104888, GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: RPE, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 49%,
"5_TxWk": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, ZNF263, MYCN, RUNX1T1, HMGN3, ZFX, ZNF600, TOP2A, ZBTB48, WT1, FOXA1, TET2, PBX2, PAX6, YY1, RELA, OGG1, TAF15, ATF3, MYC, SMARCA4, SP140, GRHL3, MAF1, MAX, STAT3, TAL1, SUPT5H, FOS, ZSCAN4, ZNF736, SRSF3, TEAD1, ZNF573, EZH2, ESR1, ZNF652, CTCF, AR, ZNF302, HNRNPLL, SCRT1, GLIS2, MAZ, AATF, AHR
- Target gene symbol (double-evidenced CRMs): SPATC1L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 102
- Number of somatic mutations (non-coding): 0
- Related genes and loops