- Basic information
- CohesinDB ID: CDBP00421440
- Locus: chr21-46171924-46173761
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Data sourse: GSE206145, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 41%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFATC3, TRP47, CBFA2T2, BRD1, CBX3, ZNF263, MYCN, SIN3A, ZFX, ZNF600, ZBTB17, ZBTB48, WT1, TET2, ZBTB33, ERG3, CBX8, ZNF529, YY1, RELA, ZNF384, TAF15, ATF3, MYC, SP140, PRDM9, TAL1, MAX, CBFA2T3, GATA1, RCOR1, ZNF320, ZNF467, TRIM28, RBM39, EZH2, ZNF3, ESR1, ZNF41, SETDB1, EBF3, ZNF22, CTCF, TCF12, BCL11A, LMO1, AR, E2F6, ZBTB42, RNF2, ZNF490, MAZ, EHMT2, AHR
- Target gene symbol (double-evidenced CRMs): SPATC1L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 20
- Number of somatic mutations (non-coding): 0
- Related genes and loops