- Basic information
- CohesinDB ID: CDBP00421442
- Locus: chr21-46178694-46178929
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Data sourse: ENCSR153HNT, GSE72082
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Cell type: K-562, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 62%,
"5_TxWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, FOXA1, RXRB, KDM3A, ZBTB7B, HDGF, THAP1, PAX5, TEAD1, HDAC8, E4F1, ARID5B, E2F4, ZNF528, KMT2B, GATAD2A, ZNF263, POU5F1, CTBP1, STAT1, SAP130, ZBTB8A, SMARCA4, FOXK2, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, GABPB1, ZHX2, GATA2, MXD3, FLI1, DRAP1, MXI1, HCFC1, RELB, EP400, RUNX1, HDAC1, CEBPA, TET2, SP5, SMARCC1, PRDM10, ZBTB2, TFDP1, ATF2, SP2, SMARCB1, GMEB1, PML, SMAD1, C11orf30, EVI1, ARID2, IKZF5, RBM25, MBD2, NFATC3, CBFA2T2, CBX3, CREM, CHD2, WT1, MEF2C, DEAF1, NEUROD1, JUNB, ZFP36, BATF, PLAG1, BCL11B, EGR2, ELF3, ARID4B, ZBTB26, NCOR1, SCRT1, ILF3, ZNF316, FOSL1, KDM4B, PBX2, ATF3, ZFP64, ZNF467, ELF1, RBM39, SMAD5, CTCF, JUN, MNT, LMO1, DPF2, RYBP, DDX20, TFAP2C, RBPJ, MTA2, ZBTB17, ZBTB48, NONO, SRF, NBN, PBX1, KDM4A, FOXP2, BATF3, MIER3, VDR, NR3C1, KMT2A, TBL1XR1, EBF3, ZSCAN29, SMARCA5, THAP11, SOX13, ZNF770, ZMIZ1, CEBPZ, SP3, ARNT, NFIB, BACH1, ZNF48, ZEB2, NFYA, PBX3, NCAPH2, TEAD3, KLF9, TBX5, USF1, SP1, BCL11A, NKX2-5, ATF7, SALL4, ASH2L, GLIS2, SMC3, MLLT1, STAG2, TRP47, AGO1, MTA3, EBF1, MAFF, ZNF580, ZKSCAN1, KDM1A, BRG1, PCGF1, GATA3, TAL1, ZNF143, MTA1, AGO2, ZNF141, TP53, ZNF334, BRD2, KAT8, EGR1, RB1, TFIIIC, RNF2, IKZF2, BRD4, JUND, CUX1, CBX5, PGR, UBTF, CHD7, ZNF444, ATF4, MXD4, SMARCE1, NFE2L2, SAP30, ESR1, KLF1, SOX4, E2F6, TRIM24, GTF2F1, GLIS1, POU2F2, ASH1L, ZSCAN5A, ERG2, SP4, TBP, HOXC5, OGG1, ETS1, MYC, ARID1B, GABPA, MCRS1, STAT3, IKZF1, GFI1, DNMT3B, SRSF3, YBX3, EZH2, MRTFA, PHF8, SPI1, HDAC2, INTS13, GATAD2B, NFYB, ZNF554, ETV5, BCL6, SIN3A, ERG3, RARA, ZNF384, NFYC, TAF15, SMAD4, CBFA2T3, ZEB1, ZMYM3, SUPT16H, NCOA1, RBM22, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, BCOR, AATF, RELA, TARDBP, ZNF282, SKIL, MGA, MAX, ZNF592, GFI1B, TCF7L2, NR2F1, KDM5B, NEUROG2, PKNOX1, MYOD1, AR, DMAP1, AHR, FOSL2, HMG20A, HMGN3, MEIS2, RBFOX2, ZFHX2, ZNF362, CTCFL, MECOM, ZNF736, TRIM28, MLL, ZFP91, TCF12, EP300, SOX6, CREB3, E2F1, TEAD4, BRD1, MYCN, RUNX1T1, ID3, GATAD1, ARID3A, MIER1, ZNF341, RAD21, GRHL3, XRCC5, ZNF614, ZNF639, IRF1, ZGPAT, ZNF766, MRTFB, ATF1, PTBP1, CBX1, SMC1A, SIRT6, ZFX, SMAD3, TWIST1, NSD2, BRD9, ZNF184, NRF1, PBX4, SUPT5H, FOS, CHD1, MED1, CEBPD, MYB, SCRT2, VEZF1, ZNF3, L3MBTL2, SETDB1, KLF16, NIPBL, ZBTB7A, TCF3, SKI, ZNF283, KLF13, FOXA2, RBBP5, E2F8, ZNF600, MIER2, ZBTB33, HOXB13, YY1, SP140, HIF1A, OTX2, GATA1, CEBPG, NR2F2, BHLHE40, TAF1, ZBTB40, MYNN, CLOCK, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): SPATC1L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops