- Basic information
- CohesinDB ID: CDBP00421449
- Locus: chr21-46202810-46203673
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Data sourse: ENCSR000BTU, GSE67783, GSE101921, ENCSR153HNT, GSE97394
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Cell type: Ishikawa, HCAEC, K-562, HSPC, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
84% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 53%,
"5_TxWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, AGO1, MYCN, SIN3A, ZFX, WT1, ZBTB48, RELA, MYC, RAD21, CHD7, GRHL3, SP140, MAX, AGO2, SRSF3, SCRT2, RBM22, BCL11A, FLI1, SCRT1, TCF3, MAZ, SMC1
- Target gene symbol (double-evidenced CRMs): COL6A2,LSS,PCBP3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops