- Basic information
- CohesinDB ID: CDBP00421465
- Locus: chr21-46258895-46259908
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Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 83%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, XBP1, PATZ1, FOXA1, RBFOX2, LEO1, PBX2, TFAP4, HDGF, ATF3, ZFP64, ZNF362, RUNX3, PRDM1, MORC2, CBFB, GLYR1, ZNF189, SMARCE1, PAX5, TP63, MITF, JMJD1C, ZNF629, KLF5, MAF, ZNF121, TRIM28, BCLAF1, SNAI2, ELF1, RBM39, LMO2, ESR1, RCOR2, OCA2, SMAD5, USF2, CTCF, TCF12, JUN, SND1, KLF1, E4F1, MNT, LMO1, SOX5, DPF2, TRIM24, IRF4, SOX6, RAD51, E2F1, ZNF528, FOXA3, GTF2F1, PDX1, RBPJ, EED, TFAP2C, GLIS1, JARID2, ZNF573, POU2F2, CHD8, BRD1, MYCN, POU5F1, RUNX1T1, ZNF263, ID3, TOP2A, ZNF317, ZBTB17, ZBTB48, ZSCAN5A, STAT1, MTA2, ZMYND11, GATAD1, SAP130, NBN, DDX5, ERG, ASCL1, ZNF597, ZNF341, ETS1, MYC, NFKB2, SMARCA4, OGG1, ARID1B, HOMEZ, RAD21, GRHL3, NKX2-1, FOXK2, GABPA, STAT3, IKZF1, MIER3, HNRNPH1, ZNF639, NR2F6, DNMT3B, NFE2, NR3C1, CEBPB, CREB1, EZH2, ARHGAP35, GRHL2, EBF3, GABPB1, ZHX2, SPI1, KLF17, HDAC2, INTS13, GATA2, GATAD2B, SREBF1, FLI1, HCFC1, ZGPAT, ZNF777, SMARCA5, RELB, HCFC1R1, NFIL3, NCOA2, ATF1, CC2D1A, RUNX1, BCL6, SMC1A, HDAC1, SIRT6, NKX2-2, CEBPA, SIN3A, ZFX, SOX13, ZNF534, LDB1, SMAD3, ZNF770, ERG3, TET2, TRIM22, PRDM10, CREBBP, ZNF384, NOTCH1, RARA, TAF15, RUNX2, CDK6, ZNF184, SP3, ARNT, PBX4, BACH1, ZNF48, ATF2, SMAD4, HMBOX1, PRDM9, PBX3, MAFB, SP2, SUPT5H, CDK8, FOS, MED1, TEAD3, MYB, SCRT2, PIAS1, ZNF3, NCOA1, L3MBTL2, EVI1, RBM22, USF1, BCL11A, SP1, ARID2, IKZF5, REST, ZBTB7A, RBM25, ATF7, ZHX1, ASH2L, PHIP, TCF3, FOXP1, AATF, SMC3, STAG1, MLLT1, NFATC3, AGO1, ZNF283, TRP47, MEF2B, FOXA2, ZNF207, EBF1, CHD2, PAF1, E2F8, ZNF600, CBX3, ZBED1, WT1, GTF2B, MAFF, NFATC1, ZSCAN16, MEF2C, ZBTB33, CDK9, HOXB13, BCL3, KDM1A, YY1, RELA, CREB3L1, TARDBP, NEUROD1, TEAD1, ZNF282, SP140, TCF4, SKIL, ZIC2, BHLHE22, MGA, TAL1, MAX, SPIB, GATA1, AGO2, ZNF143, NRIP1, ZNF449, PLAG1, CEBPG, KLF4, SP7, GFI1B, NR2F2, NCOA3, BCL11B, NEUROG2, TCF7L2, NR2F1, KDM5B, ZNF687, PKNOX1, IRF5, TP53, MED, NFKB1, ELF3, KAT8, TBX21, BHLHE40, AR, PAX3-FOXO1, ZBTB16, ZBTB40, RXR, EGLN2, EGR1, HEXIM1, TFIIIC, MYNN, NCOR1, RNF2, SCRT1, BRD4, JUND, ILF3, IKZF2, MAZ, ZBTB26, HSF1, ZZZ3, BRCA1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 72
- Number of somatic mutations (non-coding): 36
- Related genes and loops