- Basic information
- CohesinDB ID: CDBP00421466
- Locus: chr21-46260712-46261705
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 75%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, POU2F2, MYCN, POU5F1, ZNF263, PAF1, ZFX, ZNF600, ZNF317, ZBTB48, ZSCAN5A, WT1, ERG3, RBFOX2, LEO1, HOXB13, YY1, RELA, ZNF384, ATF3, MYC, SP140, GRHL3, HIF1A, ARNT, GLYR1, ZNF189, SUPT5H, AGO2, ZNF143, DNMT3B, HNRNPH1, PRDM14, NFE2, CEBPG, CEBPB, KLF4, NCOA3, TEAD3, ZNF121, EZH2, ZNF3, ESR1, BMPR1A, CTCF, RBM22, AR, TAF1, BRD4, FOXP1, MAZ, ZZZ3, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 108
- Number of somatic mutations (non-coding): 54
- Related genes and loops