- Basic information
- CohesinDB ID: CDBP00421487
- Locus: chr21-46301269-46303301
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Data sourse: GSE206145-GSE177045, GSE67783, GSE86191, GSE111913, GSE206145-NatGen2015, ENCSR153HNT, GSE165895
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Cell type: MCF-7, Fibroblast, HCT-116, RT-112, K-562, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: Mau2,SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 59%,
"4_Tx": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM25, HMGN3, XBP1, PATZ1, FOXA1, RBFOX2, LEO1, ATF3, THAP1, CBFB, GLYR1, ZNF189, TP63, ZNF320, ELF1, ZNF121, TRIM28, SNAI2, ESR1, OCA2, USF2, CTCF, KLF1, PAX8, RFX5, TFAP2C, EED, GLIS1, POU2F2, MYCN, ZNF263, TOP2A, ZBTB48, ZSCAN5A, STAT1, DDX5, SP4, ERG, USP7, OGG1, MYC, SMARCA4, ZNF2, GRHL3, GABPA, APC, STAT3, DNMT3B, CEBPB, ZNF93, CREB1, KLF8, GRHL2, SPI1, SSRP1, ZNF554, RUNX1, SMC1A, CEBPA, ZFX, RARA, ZNF384, ARNT, ZEB2, NCAPH2, SUPT5H, CDK8, SCRT2, ZNF680, ZNF3, SREBF2, ZNF22, RBM22, ARID2, ZBTB7A, BCOR, GLIS2, AATF, STAG1, TRP47, CBFA2T2, FOXA2, MTA3, EBF1, PAF1, ZNF600, ZBTB33, YY1, RELA, SP140, ZIC2, HIF1A, ZNF143, AGO2, NCOA3, NR2F1, KDM5B, TP53, MYOD1, AR, HEXIM1, TFIIIC, HSF1, SCRT1, BRD4, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): YBEY,C21orf58
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 410
- Number of somatic mutations (non-coding): 77
- Related genes and loops