- Basic information
- CohesinDB ID: CDBP00421488
- Locus: chr21-46303800-46304479
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 72%,
"4_Tx": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, XBP1, FOXA1, PBX2, HDGF, ATF3, ZNF362, ZNF444, GLYR1, ZNF121, ESR1, OCA2, CTCF, JUN, KLF1, DPF2, ZNF512B, E2F1, TEAD4, PDX1, POU2F2, POU5F1, ID3, ZNF317, STAT1, DDX5, ERG, RFX1, ARID1B, KDM4A, GRHL3, GABPA, XRCC5, NKX3-1, NFE2, DNMT3B, RCOR1, CREB1, EZH2, HDAC2, GATA2, NR2C2, ATF1, LDB1, NKX2-2, CRY1, ZFX, ZNF384, ZNF184, ATF2, HMBOX1, NFYA, MAFB, TEAD3, CEBPD, NCOA1, ZNF22, BCL11A, RBM25, ATF7, BCOR, MLLT1, FOXA2, MTA3, CREM, CBX3, ZSCAN16, ZBTB33, ZKSCAN1, RELA, NEUROD1, ZFP36, HIF1A, TAL1, ZNF143, GATA1, ZNF592, GFI1B, NR2F2, TP53, PKNOX1, AR, JUND, ILF3, CLOCK, ZNF316
- Target gene symbol (double-evidenced CRMs): C21orf58
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 0
- Related genes and loops