- Basic information
- CohesinDB ID: CDBP00421490
- Locus: chr21-46308963-46309421
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 55%,
"4_Tx": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, NME2, MEIS2, XBP1, PBX2, LEO1, HDGF, NFIC, RUNX3, PAX5, BACH2, TEAD1, LMO2, ESR1, HNF1B, USF2, CTCF, JUN, TCF12, SOX4, PRDM4, TRIM24, RAD51, TEAD4, POU2F2, MTA2, ZBTB48, STAT1, DDX5, MYC, ARID1B, GABPA, STAT3, RCOR1, NFE2, DACH1, NR2F6, CEBPB, EZH2, ZHX2, HDAC2, GATA2, RUNX1, MAFG, SMC1A, HDAC1, LDB1, SIN3A, ZFX, SMAD3, ZNF770, ZNF384, RUNX2, CDK6, GATA4, PBX4, DAXX, ARNT, HMBOX1, CBFA2T3, PBX3, SUPT5H, FOS, CDK8, PML, CEBPD, MYB, TERF1, STAT5A, KLF16, MAFK, BCL11A, USF1, REST, BCOR, PAX7, TRP47, CBFA2T2, FOXA2, EBF1, ZNF600, WT1, KDM1A, JUNB, NEUROD1, SP140, OTX2, GATA3, BATF, TAL1, MAX, ZNF143, GATA1, NCOA3, NR2F2, GFI1B, TCF7L2, TP53, PKNOX1, MYOD1, TBX21, BHLHE40, AR, EGLN2, NCOR1, JUND, ZNF24, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): C21orf58
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops