- Basic information
- CohesinDB ID: CDBP00421498
- Locus: chr21-46332516-46334205
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Data sourse: ENCSR000EFJ, GSE67783, GSE86191, ENCSR000HPG, ENCSR000BLY, GSE111913, GSE206145-NatGen2015, ENCSR153HNT, GSE50893, GSE165895
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Cell type: Fibroblast, HCT-116, GM18505, RT-112, IMR-90, SK-N-SH, K-562, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 56%,
"4_Tx": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, FOXA2, ZFX, ZBTB17, SMAD3, MEF2C, HOXC5, MEF2A, RELA, JUNB, ATF3, RUNX2, MYC, GATA4, RAD21, PBX4, DAXX, GATA3, GABPA, STAT3, MAX, PBX3, NKX3-1, FOS, CDK8, SUPT5H, RCOR1, ZNF143, MED1, NR3C1, CEBPB, CREB1, ESR1, MLL, HDAC8, ZNF334, NFKB1, JUN, TCF12, MAFK, SPI1, EP300, FLI1, MXI1, BRD4, JUND, ZNF528, MRTFB, PDX1, FOSL2
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops