- Basic information
- CohesinDB ID: CDBP00421499
- Locus: chr21-46334427-46334742
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Data sourse: GSE67783, GSE111913, ENCSR153HNT
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Cell type: K-562, RT-112, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 67%,
"5_TxWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, TBL1X, ZNF263, MYCN, ZFX, ZNF600, XBP1, WT1, ZBTB48, FOXA1, ERG3, DDX5, ERG2, LEO1, CDK9, ZFHX2, HOXB13, CREBBP, ZNF384, ZNF341, ETS1, MYC, CDK6, RUNX3, ZIC2, ARNT, GLYR1, MECOM, GABPA, PAX5, ZNF143, DNMT3B, ARNTL, NR3C1, JMJD1C, NCOA3, EZH2, ZNF3, ESR1, NCOA1, GRHL2, HDAC8, USF2, EGR2, CTCF, SND1, RBM22, SP1, AR, GATA6, SSRP1, GATA2, BRD4, MAZ, NCOA2, ZFP42, RBPJ
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 124
- Number of somatic mutations (non-coding): 0
- Related genes and loops