- Basic information
- CohesinDB ID: CDBP00421512
- Locus: chr21-46362947-46363290
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 69%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, FOXO1, PGR, CHD8, MYCN, SIN3A, ZFX, ZNF600, CTBP1, XBP1, WT1, ZBTB48, ZSCAN5A, FOXA1, STAT1, ERG3, ERG2, LEO1, HOXB13, TBP, RELA, IRF2, CREBBP, ATF3, MYC, SP140, HIF1A, ZNF8, APC, XRCC5, NRIP1, SUPT5H, ZNF143, DNMT3B, NCOA3, ELF1, EZH2, ZNF3, ESR1, ZNF334, CTCF, RBM22, AR, SIX2, BRD4, MAZ, STAG1, AHR, EED
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops