- Basic information
- CohesinDB ID: CDBP00421514
- Locus: chr21-46365321-46370918
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Data sourse: GSE38395, ENCSR000EAC, GSE67783, GSE86191, GSE206145-NatGen2015, ENCSR000BMY, ENCSR153HNT, GSE50893
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Cell type: GM2630, Fibroblast, HCT-116, GM12878, GM2588, GM12891, hLCL, GM2255, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: NIPBL,SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 40%,
"4_Tx": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, HMGN3, XBP1, FOXA1, LEO1, TFAP4, HDGF, LYL1, ATF3, RUNX3, CBFB, MECOM, PAX5, TP63, ZNF736, JMJD1C, MAF, KLF5, ELF1, BCLAF1, ZNF573, TRIM28, SNAI2, LMO2, ESR1, OCA2, MLL, USF2, CTCF, SND1, TCF12, DPF2, IRF4, RAD51, GTF2F1, RBPJ, EED, GLIS1, JARID2, POU2F2, MYCN, ZNF263, RUNX1T1, MTA2, ZNF317, ZBTB48, ZSCAN5A, STAT1, DDX5, NBN, ARID3A, ERG2, ERG, OGG1, NFKB2, MYC, RAD21, GRHL3, STAT3, PRDM14, IKZF1, NFE2, DNMT3B, NR3C1, CEBPB, STAT5B, KMT2A, EZH2, GABPB1, SPI1, IRF1, GATA2, GATAD2B, FLI1, HCFC1, SMARCA5, RELB, RUNX1, SMC1A, BCL6, CEBPA, ZFX, ERG3, TRIM22, ZNF18, CDK6, ARNT, BACH1, ZBTB10, PBX3, CHD1, MED1, ZEB1, TERF1, PML, MYB, SCRT2, SMAD1, EVI1, STAT5A, RBM22, USF1, BCL11A, SP1, NIPBL, NR4A1, ATF7, ZHX1, ASH2L, TCF3, GLIS2, AATF, NCOR2, MLLT1, STAG1, NFATC3, TRP47, MEF2B, PPARG, FOXA2, AGO1, ZNF207, EBF1, PAF1, E2F8, ZNF600, ZSCAN16, GTF2B, WT1, ZBTB33, MEF2C, CDK9, HOXB13, KDM1A, YY1, RELA, TARDBP, SP140, ZFP36, SKIL, TCF4, BHLHE22, BATF, TAL1, MAX, ZNF143, AGO2, GATA1, NCOA3, NR2F1, KDM5B, TP53, ZNF687, PKNOX1, BCL6B, NFKB1, TBX21, BHLHE40, AR, TAF1, ZBTB40, RXR, ZBTB42, HEXIM1, EGR1, RB1, HSF1, NCOR1, IKZF2, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 123
- Number of somatic mutations (non-coding): 0
- Related genes and loops