- Basic information
- CohesinDB ID: CDBP00421520
- Locus: chr21-46381146-46381978
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Data sourse: GSE98367, GSE126634, GSE152721, GSE120943, ENCSR153HNT
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Cell type: K-562, Monocytes, HAP1, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 52%,
"4_Tx": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM25, NME2, XBP1, FOXA1, LEO1, ATF3, ZNF362, CBFB, TP63, ZSCAN4, KLF5, ELF1, TRIM28, RBM39, LMO2, ESR1, MLL, USF2, CTCF, JUN, BAF155, ZNF410, ZNF512B, E2F1, ZNF280A, ZNF175, TFAP2C, POU2F2, CHD8, BRD1, ZSCAN5D, MYCN, ZNF263, TOP2A, NANOG, ZNF317, ZBTB48, DDX5, ERG, OGG1, MYC, SMARCA4, GRHL3, GABPA, STAT3, NKX3-1, DNMT3B, ZNF750, NR3C1, CEBPB, EZH2, GRHL2, GATA2, MXD3, FLI1, ZIM3, RUNX1, CBX1, ZFX, TWIST1, ZNF18, RARA, ZNF384, RUNX2, NCAPH2, SUPT5H, PIAS1, ZNF3, L3MBTL2, SETDB1, ZNF22, RBM22, MAFK, BCL11A, ASH2L, MBD2, FOXP1, AATF, STAG1, TRP47, ZNF316, FOXA2, CBX3, AGO1, RBBP5, PAF1, ZNF600, ZSCAN16, MAFF, ZNF30, WT1, ZBTB33, HOXB13, KDM1A, YY1, RELA, SP140, HIF1A, GATA3, MAX, ZNF143, AGO2, GATA1, KLF4, NCOA3, NR2F1, KDM5B, ZBTB6, AR, RXR, EGLN2, TFIIIC, ZBTB26, HSF1, BRD4, MAZ, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 33
- Number of somatic mutations (non-coding): 0
- Related genes and loops