- Basic information
- CohesinDB ID: CDBP00421523
- Locus: chr21-46384475-46384979
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 48%,
"5_TxWk": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, TRIM25, SOX2, HMGN3, XBP1, FOXA1, LEO1, PBX2, ZFHX2, ATF3, THAP1, CTCFL, CHD7, ZBTB44, CBFB, TP63, JMJD1C, ELF1, TRIM28, ZNF121, TEAD1, LMO2, ESR1, OCA2, PITX3, CTCF, TCF12, EP300, E2F6, ZNF528, TFAP2C, JARID2, GLIS1, NANOG, POU2F2, BRD1, POU5F1, MYCN, ZNF263, ZBTB48, ZSCAN5A, STAT1, ZNF134, ERG2, ERG, OGG1, ETS1, MYC, SMARCA4, FOXP2, GRHL3, GABPA, STAT3, PRDM14, RCOR1, DNMT3B, ARNTL, NR3C1, SRSF3, KMT2A, EZH2, GRHL2, EBF3, GABPB1, ZHX2, SPI1, SSRP1, GATA2, FLI1, MXI1, RUNX1, SMC1A, CEBPA, CRY1, ZFX, TET2, ERG3, TWIST1, CREBBP, RARA, RUNX2, ARNT, ZNF10, CHD1, CDK8, FOS, MYB, C11orf30, RBM22, MAFK, USF1, REST, ASH2L, HNRNPLL, BCOR, FOXP1, MBD2, TCF3, AATF, SMC3, STAG1, TRP47, FOXA2, AGO1, CHD2, PAF1, MAFF, WT1, ZBTB33, CDK9, HOXB13, BCL3, YY1, RELA, NEUROD1, AHR, SP140, ZIC2, NRIP1, ZNF143, AGO2, GATA1, HAND2, CBX2, NCOA3, NR2F1, KDM5B, PKNOX1, MED, ZNF334, MYOD1, EGR2, RBM14, ARRB1, AR, RXR, EGLN2, ZBTB42, HEXIM1, HSF1, ZBTB26, BRD4, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops