- Basic information
- CohesinDB ID: CDBP00421528
- Locus: chr21-46396119-46399536
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Data sourse: GSE67783, GSE86191, GSE111913, ENCSR000BLY, GSE206145-NatGen2015, ENCSR153HNT, GSE83726, GSE116344, GSE25021
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Cell type: MCF-7, Fibroblast, HCT-116, RH4, RT-112, SK-N-SH, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 50%,
"5_TxWk": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ERG2, KLF5, ZNF263, ZFX, ZBTB26, STAT1, MAZ, ERG3, EGR2, CTCF, STAG1
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 97
- Number of somatic mutations (non-coding): 0
- Related genes and loops