- Basic information
- CohesinDB ID: CDBP00421533
- Locus: chr21-46409280-46410234
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Data sourse: GSE85526, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC, HEKn
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 59%,
"4_Tx": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, CHD8, ZNF207, POU5F1, ZFX, ZBTB48, ZSCAN5A, WT1, FOXA1, RELA, MYC, RAD21, SP140, CHD7, HIF1A, NRIP1, ZNF143, NR3C1, KDM5B, CTCF, RBM22, TBX21, EGLN2, BRD4, SCRT1, BCOR, STAG1
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops