- Basic information
- CohesinDB ID: CDBP00421535
- Locus: chr21-46413887-46415371
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Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 49%,
"5_TxWk": 47%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM25, FOSL1, PGR, HMGN3, XBP1, FOXA1, LEO1, ZFHX2, HDGF, ATF3, ZNF362, CTCFL, KLF14, CBFB, TP63, TEAD1, TRIM28, ELF1, SNAI2, ESR1, USF2, CTCF, ZNF528, TEAD4, TFAP2C, JARID2, CHD8, BRD1, ZSCAN5D, ZNF263, MYCN, POU5F1, RUNX1T1, ZBTB48, ZSCAN5A, ERG2, SP4, ERG, OGG1, ETS1, MYC, GRHL3, GABPA, STAT3, DNMT3B, NR3C1, CEBPB, HNRNPL, EZH2, ZHX2, FLI1, RUNX1, SMC1A, NKX2-2, SIRT6, ZFX, NFKBIA, ERG3, NFXL1, RARA, ZNF384, GR, SP3, ARNT, PRDM9, SATB1, NCAPH2, SUPT5H, ZNF3, KLF9, ZNF22, RBM22, SP1, TFAP2A, REST, CTBP2, MBD2, AATF, SMC3, STAG1, TRP47, AGO1, FOXA2, RBBP5, TBL1X, ZNF600, WT1, ZBTB33, YY1, RELA, TARDBP, SP140, ZIC2, HIF1A, KLF15, TAL1, MAX, ZNF143, AGO2, NCOA3, NR2F1, KDM5B, TP53, ZNF334, EGR2, ARRB1, AR, RXR, HEXIM1, EGR1, TFIIIC, HSF1, BRD4, SCRT1, CLOCK, MAZ
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 20
- Number of somatic mutations (non-coding): 0
- Related genes and loops