- Basic information
- CohesinDB ID: CDBP00421537
- Locus: chr21-46418342-46419084
-
Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE86191
-
Cell type: K-562, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"4_Tx": 63%,
"5_TxWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, TRIM25, FOSL1, HMGN3, XBP1, FOXA1, LEO1, ZFHX2, HNRNPK, HDGF, ZNF90, ATF3, ZNF362, THAP1, CHD7, CTCFL, CBFB, GLYR1, TP63, ZNF467, MAF, JMJD1C, TEAD1, TRIM28, ZNF121, RBM39, SNAI2, LMO2, ESR1, OCA2, USF2, CTCF, JUN, KLF1, ARID5B, LMO1, IRF4, E2F4, SMC1, GTF2F1, TFAP2C, GLIS1, JARID2, CHD8, BRD1, ZSCAN5D, MYCN, ZNF263, TOP2A, KDM4C, POU5F1, CDK7, ID3, ZBTB48, ZSCAN5A, STAT1, ZNF205, ERG2, SP4, TBP, ERG, ASCL1, OGG1, ETS1, MYC, SMARCA4, TOP1, RAD21, GRHL3, NKX2-1, GABPA, STAT3, APC, XRCC5, PRDM14, RCOR1, DNMT3B, NR3C1, CEBPB, SRSF3, HNRNPL, KMT2A, CREB1, GRHL2, GABPB1, ZHX2, SPI1, KLF17, PCBP1, GATA2, MXD3, FLI1, HCFC1R1, PTBP1, ETV5, RUNX1, SMC1A, MAFG, CEBPA, SIRT6, BCL6, ZFX, PCBP2, ZNF770, TET2, ERG3, NSD2, CREBBP, ZNF384, ZBTB2, NOTCH1, TAF15, ARNT, BACH1, SOX11, ZNF48, PRDM9, ZEB2, SUPT5H, FOS, CDK8, CHD1, MED1, ZEB1, TEAD3, KDM6B, MYB, SCRT2, SMAD1, ZNF3, KLF9, C11orf30, SETDB1, SREBF2, ZNF22, RBM22, BCL11A, SP1, NR4A1, ARID2, REST, ZBTB7A, ZNF605, HNRNPLL, CTBP2, BCOR, GLIS2, AATF, SMC3, STAG1, STAG2, MLLT1, NFATC3, ZNF283, TRP47, CBFA2T2, ZNF316, FOXA2, AGO1, EBF1, PAF1, ZNF600, WT1, ZBTB33, MEF2C, CDK9, HOXB13, KDM1A, ZNF19, YY1, RELA, TARDBP, NEUROD1, ZNF148, SP140, ZIC2, HIF1A, TCF4, BHLHE22, GATA3, TAL1, MAX, SPIB, GATA1, AGO2, ZNF143, PLAG1, CBX2, ZFP69B, BCL11B, ZNF141, NR2F1, KDM5B, TP53, ZBTB6, ZNF334, MYOD1, EGR2, TBX21, ARID4B, AR, TAF1, RXR, HEXIM1, EGR1, TFIIIC, HSF1, ZBTB26, MYNN, BRD4, SCRT1, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 7
- Number of somatic mutations (non-coding): 7
- Related genes and loops