- Basic information
- CohesinDB ID: CDBP00421546
- Locus: chr21-46441382-46442462
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Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: RPE, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 81%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, SOX2, HMGN3, XBP1, HNF1A, KDM4B, FOXA1, LEO1, ZFHX2, HDGF, ATF3, ZNF362, CTCFL, ZBTB44, IKZF3, CBFB, GLYR1, TP63, BACH2, ZNF467, CDX2, TRIM28, NFE2L2, LMO2, ESR1, HNF1B, CTCF, JUN, KLF1, GATA6, SOX5, PAX8, DPF2, E2F6, PRDM4, DEK, E2F1, ZNF528, GATAD2A, TFAP2C, JARID2, GLIS1, CHD8, BRD1, ZSCAN5D, MYCN, ZNF263, POU5F1, RUNX1T1, ID3, ZNF317, ZBTB17, ZBTB48, ZSCAN5A, STAT1, DDX5, ERG2, ERG, OGG1, MYC, RAD21, GRHL3, NKX2-1, GABPA, STAT3, XRCC5, PRDM14, NFE2, DNMT3B, HNRNPH1, ZNF639, NR3C1, CEBPB, SRSF3, HNRNPL, BMPR1A, FEZF1, NFE2L1, SPI1, ZNF644, MXD3, FLI1, DRAP1, ZGPAT, RUNX1, THAP11, MAFG, BCL6, HDAC1, NKX2-2, SOX13, ZFX, SMAD3, ZNF770, TET2, ERG3, NSD2, CREBBP, ZNF384, TAF15, RUNX2, CDK6, ARNT, BACH1, SOX11, ZNF48, PRDM9, SUPT5H, FOS, CHD1, TEAD3, TERF1, ZNF264, MYB, ZMYM3, ZNF3, KLF9, C11orf30, L3MBTL2, SETDB1, SREBF2, EVI1, ZNF22, RBM22, MAFK, BCL11A, SP1, HNF4A, REST, ZBTB7A, RBM25, BCOR, FOXP1, TCF3, AATF, SMC3, STAG1, TRP47, CBFA2T2, FOXA2, AGO1, TBL1X, MTA3, PAF1, E2F8, ZNF600, ZSCAN16, CBX3, WT1, MAFF, MIER2, NFATC1, ZBTB33, ZNF580, KDM1A, YY1, RELA, NEUROD1, AHR, SP140, ZIC2, HIF1A, OTX2, GATA3, MAX, GATA1, AGO2, ZNF143, CEBPG, EBF1, NR2F1, TCF7L2, KDM5B, TP53, ZBTB6, ZNF334, EGR2, AR, RXR, HEXIM1, EGR1, HSF1, ZBTB26, MYNN, BRD4, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): PCNT
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops