- Basic information
- CohesinDB ID: CDBP00421595
- Locus: chr21-46550355-46552742
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, GSE105028, GSE103477, GSE25021, ENCSR917QNE, GSE67783, GSE86191, GSE206145-NatGen2015, GSE120943, GSE106870, GSE98367, ENCSR000ECE, ENCSR000BTQ, ENCSR167MTG, GSE111913, GSE155324, ENCSR153HNT, GSE50893, GSE126755, GSE131577
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Cell type: MDM, GM10847, GM2610, HSPC, CVI-hiPSC, Liver, H9-hESC, GM2630, Fibroblast, GM2255, K-562, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Lymphoblast, GM12878, GM12891, GM2588, GM19239, RT-112, GM19193, THP-1, Macrophage, MCF-7, GM12892, HCT-116, HL-60, Hep-G2, GM19238, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 13% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.633
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 40%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, CBFA2T2, BCL6, SMC1A, FOXA2, MYCN, ZSCAN5D, CEBPA, PAF1, ZFX, ZNF263, XBP1, EBF1, ZBTB48, WT1, FOXA1, LEO1, ERG, YY1, RELA, RARA, CREBBP, OGG1, ZNF341, ATF3, MYC, RUNX2, SMARCA4, RUNX3, SP140, GRHL3, CBFB, ZNF48, GATA3, GABPA, STAT3, TAL1, NKX3-1, FOS, GATA1, NFE2, AGO2, CHD1, DNMT3B, MED1, NR3C1, CEBPB, PDX1, MAF, STAT5B, KDM6B, KMT2A, MYB, KDM5B, STAG1, EZH2, OCA2, KLF9, ZNF334, USF2, CTCF, RBM22, JUN, BCL11A, SPI1, TBX21, LMO1, AR, BHLHE40, DPF2, HSF1, BRD4, TCF3, MAZ, MLLT1
- Target gene symbol (double-evidenced CRMs): PRMT2,DIP2A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 164
- Number of somatic mutations (non-coding): 82
- Related genes and loops