- Basic information
- CohesinDB ID: CDBP00421596
- Locus: chr21-46553449-46555999
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Data sourse: ENCSR167MTG, ENCSR338DUC, GSE67783, GSE72082, GSE86191, GSE25021, GSE111913, ENCSR000BLS, ShirahigeLab, ShirahigeLab-NatGen2015, ENCSR153HNT, GSE68388, GSE131606
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, Hep-G2, RT-112, K-562, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 51%,
"5_TxWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, XBP1, LEO1, TFAP4, LYL1, ATF3, MECOM, MITF, JMJD1C, MAF, INTS11, ELF1, TRIM28, BCLAF1, RBM39, TEAD1, LMO2, ESR1, OCA2, MLL, CTCF, TCF12, JUN, KLF1, LMO1, TFAP2C, POU2F2, MYCN, POU5F1, RUNX1T1, ZBTB48, ZSCAN5A, STAT1, DUX4, ERG2, ERG, OGG1, MYC, RAD21, GRHL3, GABPA, STAT3, NFE2, HNRNPH1, NR3C1, ESRRA, CEBPB, STAT5B, KMT2A, GABPB1, ZHX2, SPI1, INTS13, GATA2, FLI1, RUNX1, SMC1A, BCL6, CEBPA, ZFX, ERG3, CREBBP, TAF15, ARNT, ZNF48, FOS, ZEB1, MYB, ZNF3, EVI1, RBM22, BCL11A, TFAP2A, GSPT2, SP1, NR4A1, TCF3, AATF, SMC3, STAG1, MLLT1, SKI, TRP47, FOXA2, TBL1X, RBBP5, EBF1, PAF1, ZNF600, WT1, YY1, RELA, SP140, HIF1A, TAL1, GATA1, AGO2, ZNF143, NR2F1, KDM5B, EGR2, TBX21, AR, ZBTB16, RXR, HSF1, ZBTB26, BRD4, SCRT1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): DIP2A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 140
- Number of somatic mutations (non-coding): 61
- Related genes and loops