- Basic information
- CohesinDB ID: CDBP00421597
- Locus: chr21-46556380-46556655
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 74%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, NFIA, ZNF283, TRP47, ZSCAN5D, MYCN, AGO1, FOXA2, KDM4C, ZFX, POU4F2, ZNF263, ZBTB17, ZBTB48, WT1, ID3, MEIS2, TET2, ERG3, ZBTB33, LEO1, PBX2, ZFHX2, YY1, RELA, HDGF, OGG1, TAF15, ATF3, MYC, NFIC, RAD21, SP140, GRHL3, ZIC2, ZNF48, APC, MAX, XRCC5, TOP2A, CHD1, AGO2, FOS, DNMT3B, ZNF467, PLAG1, NR3C1, JMJD1C, SRSF3, HNRNPL, KDM6B, NR2F1, STAG1, ZNF3, KDM5B, SETDB1, TBX5, EGR2, CTCF, RBM22, USF1, PHF8, TCF12, BHLHE40, AR, REST, ZBTB7A, MXD3, HEXIM1, E2F4, HSF1, HNRNPLL, BRD4, MAZ, AATF, ZNF528, SMC3, ETV5, AHR
- Target gene symbol (double-evidenced CRMs): DIP2A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 5
- Related genes and loops