- Basic information
- CohesinDB ID: CDBP00421598
- Locus: chr21-46556860-46558540
-
Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE111913, ShirahigeLab, ENCSR153HNT
-
Cell type: RPE, H1-hESC, HCT-116, RT-112, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"4_Tx": 55%,
"5_TxWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXA1, LEO1, ZFHX2, ATF3, THAP1, CTCFL, CBFB, TP63, TRIM28, RBM39, ESR1, CTCF, GATA6, CHD8, BRD1, MYCN, ZNF263, ZBTB48, ZSCAN5A, ERG2, ERG, OGG1, MYC, GRHL3, STAT3, DNMT3B, HNRNPH1, SRSF3, HNRNPL, GRHL2, GABPB1, ETV5, PTBP1, RUNX1, SMC1A, SIN3A, ZFX, ERG3, CREBBP, RARA, NOTCH1, TAF15, ZNF48, NCAPH2, CHD1, SUPT5H, FOS, SMARCB1, MYB, ZNF3, RBM22, ZBTB7A, HNRNPLL, TCF3, AATF, SMC3, STAG1, TRP47, FOXA2, ZNF600, WT1, ZBTB33, RELA, TARDBP, SP140, HIF1A, TAL1, MAX, AGO2, PLAG1, NR2F1, KDM5B, TP53, MYOD1, EGR2, AR, RXR, HEXIM1, EGR1, TFIIIC, HSF1, BRD4, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): DIP2A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 264
- Number of somatic mutations (non-coding): 132
- Related genes and loops