- Basic information
- CohesinDB ID: CDBP00421612
- Locus: chr21-46600290-46601859
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Data sourse: GSE72082, GSE86191, GSE67783, ENCSR879KXD, GSE206145, ENCSR153HNT
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Cell type: RPE, HCT-116, Hep-G2, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 32%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, HMG20A, SOX2, XBP1, FOXA1, RXRB, PBX2, KDM3A, ZBTB7B, ATF3, BMI1, THRB, CTCFL, CHD7, CBFB, MXD4, DPF1, TP63, MITF, ZNF736, ZNF467, KLF5, ELF1, TRIM28, TEAD1, LMO2, ESR1, OCA2, RCOR2, USF2, CTCF, JUN, TCF12, EP300, E4F1, MNT, GATA6, SOX5, DPF2, DMAP1, PRDM4, TRIM24, RFX5, RAD51, ZNF512B, ZNF528, RFX3, ZNF280A, SMC1, FOXA3, ZNF175, TEAD4, GATAD2A, EHMT2, TFAP2C, EED, RBPJ, GLIS1, PDX1, MLX, POU2F2, CHD8, POU5F1, MYCN, TOP2A, RUNX1T1, ID3, ZNF263, CTBP1, ZBTB48, DUX4, STAT1, GATAD1, ZNF485, SAP130, ARID3A, TBP, ERG, OGG1, ETS1, MYC, SMARCA4, RFX1, HOMEZ, RAD21, ARID1B, GRHL3, RXRA, GABPA, STAT3, ZNF614, XRCC5, NKX3-1, PRDM14, IKZF1, MIER3, DNMT3B, NR2F6, RCOR1, NFE2, CEBPB, STAT5B, CREB1, TBL1XR1, EBF3, GABPB1, PHF8, ELF4, ZHX2, SPI1, TFE3, HBP1, MIXL1, ZNF257, HDAC2, GATA2, ZNF644, MXD3, ZSCAN29, FLI1, DRAP1, MXI1, ZGPAT, NFIL3, NFYB, ETV5, PTBP1, CC2D1A, RUNX1, THAP11, CBX1, BCL6, CEBPA, SIRT6, NKX2-2, HDAC1, SOX13, ZFX, SIN3A, SMC1A, SMAD3, TET2, ERG3, ZNF770, SP5, ZNF549, SMARCC1, RARA, NFYC, ZNF384, TAF15, RUNX2, CDK6, GATA4, ARNT, ZNF48, PRDM9, SMAD4, NFYA, ZEB2, PBX3, FOS, CHD1, HMGXB4, TGIF2, MED1, TEAD3, KDM6B, ZNF680, PIAS1, SCRT2, ZNF3, NCOA1, L3MBTL2, C11orf30, SETDB1, MBD1, MAFG, RBM22, USF1, SP1, BCL11A, HNF4A, IKZF5, REST, ZNF479, ZBTB7A, RBM25, ASH2L, HNRNPLL, TCF3, AATF, SMC3, STAG1, STAG2, ETV4, SKI, TRP47, CBFA2T2, ZNF316, CBX3, FOXA2, AGO1, CHD2, PPARG, CREM, ZNF600, MIER2, WT1, ZBTB33, TCF7, ZNF580, KDM1A, YY1, RELA, NEUROD1, JUNB, CHAMP1, ZNF610, SP140, ZFP36, ZIC2, HIF1A, GATA3, TAL1, MAX, NRIP1, ZNF143, AGO2, PLAG1, KLF4, CEBPG, GFI1B, NR2F2, NR2F1, KDM5B, TP53, ZBTB6, ZNF334, BCL6B, MYOD1, ELF3, PHF5A, KAT8, BHLHE40, AR, ARID4B, TAF1, NFKBIZ, RXR, HEXIM1, EGR1, TFIIIC, HSF1, ZBTB26, RNF2, BRD4, SCRT1, JUND, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): S100B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 27
- Number of somatic mutations (non-coding): 0
- Related genes and loops