- Basic information
- CohesinDB ID: CDBP00421619
- Locus: chr21-46620869-46623000
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Data sourse: ENCSR230ZWH, GSE72082, GSE103477, GSE111537, GSE25021, ENCSR917QNE, GSE67783, GSE86191, GSE76893, GSE120943, GSE116344, ENCSR000EEG, ENCSR338DUC, GSE98367, ENCSR000BLS, ENCSR000BMY, GSE55407, ENCSR167MTG, ENCSR054FKH, ENCSR153HNT, GSE83726, GSE50893
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Cell type: MDM, GM2630, HCT-116, Monocytes, Hep-G2, RH4, THP-1, GM12878, K-562, Liver, OCI-AML-3, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.856
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 37%,
"15_Quies": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, PGR, HMG20A, SOX2, XBP1, FOXA1, SUZ12, RBFOX2, RXRB, KDM3A, TFAP4, HDGF, LYL1, THRB, BMI1, ZFP64, CHD7, RUNX3, MXD4, MECOM, MITF, JMJD1C, MAF, TEAD1, TRIM28, ELF1, KLF6, RBM39, NFE2L2, RCOR2, ESR1, OCA2, LMO2, CTCF, JUN, TCF12, EP300, ARID5B, MNT, LMO1, SOX5, DPF2, TRIM24, RAD51, U2AF2, RFX3, TEAD4, FOXA3, ZNF175, KMT2B, GATAD2A, RBPJ, TFAP2C, EED, JARID2, MLX, POU2F2, CHD8, NANOG, ZNF263, MYCN, CDK7, RUNX1T1, TOP2A, MTA2, ZBTB48, ZSCAN5A, STAT1, MLLT3, GATAD1, SAP130, NBN, ARID3A, TBP, HNF4G, ERG, PBX1, ETS1, MYC, SMARCA4, RFX1, HOMEZ, RAD21, ARID1B, RXRA, MCRS1, GABPA, APC, XRCC5, ZNF614, STAT3, NKX3-1, IKZF1, MIER3, INO80, NR2F6, SOX10, VDR, NFE2, NR3C1, CEBPB, HNRNPL, KMT2A, CREB1, CCAR2, EZH2, ZNF652, GABPB1, ZHX2, SPI1, ZNF786, TFE3, MIXL1, HDAC2, GATA2, INTS13, ZNF644, MXD3, FLI1, DRAP1, ZGPAT, MXI1, RELB, NFIL3, NCOA2, PTBP1, ETV5, RUNX1, THAP11, BCL6, SMC1A, CEBPA, NKX2-2, SOX13, ZFX, FIP1L1, SIN3A, POU4F2, CBX8, TBX3, SP5, TRIM22, SMARCC1, RARA, ZNF384, NFYC, RUNX2, CDK6, NRF1, ZNF48, ATF2, SMAD4, FOXM1, MAFB, SMARCB1, HMGXB4, CDK8, MED1, TEAD3, CEBPD, MYB, ZMYM3, U2AF1, ZNF3, KLF9, EVI1, STAT5A, RBM22, MAFK, SP1, BCL11A, HNF4A, NR4A1, IKZF5, REST, ZBTB7A, ATF7, ASH2L, HNRNPLL, TCF3, FOXP1, SMC3, STAG1, MLLT1, ETV4, NFATC3, SKI, CBFA2T2, PPARG, FOXA2, CREM, MEIS1, EBF1, MIER2, ZNF600, WT1, MEF2C, CDK9, ZNF580, KDM1A, YY1, RELA, ZNF19, TARDBP, AHR, SP140, ZIC2, HIF1A, TCF4, OTX2, GATA3, TAL1, MAX, ZNF143, CBX2, CEBPG, BCL11B, KDM5B, TP53, ZNF334, BRD2, ELF3, KAT8, PHF5A, TBX21, ARID4B, AR, BHLHE40, NFKBIZ, ZBTB16, RB1, ZBTB26, HSF1, MYNN, BRD4, JUND, IKZF2, CLOCK, CUX1, MAZ, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): PRMT2
- Function elements
- Human SNPs: Cerebrospinal_fluid_t-tau:AB1-42_ratio
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops