- Basic information
- CohesinDB ID: CDBP00421632
- Locus: chr21-46650027-46650395
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 77%,
"6_EnhG": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, FOXA1, RBFOX2, LEO1, ZFHX2, HDGF, ATF3, CBFB, TP63, ELF1, SNAI2, ESR1, OCA2, CTCF, PAX8, PDX1, TFAP2C, EED, GLIS1, POU2F2, CHD8, BRD1, MYCN, ZNF263, TOP2A, POU5F1, KDM4C, ZBTB48, ZSCAN5A, ERG2, ERG, OGG1, MYC, SMARCA4, GRHL3, GABPA, STAT3, NKX3-1, DNMT3B, HNRNPH1, NR3C1, CREB1, GABPB1, ZHX2, MXD3, MXI1, NCOA2, RUNX1, SMC1A, BCL6, NKX2-2, SIRT6, CRY1, ZFX, NFKBIA, TET2, ERG3, RARA, CREBBP, RUNX2, ARNT, SOX11, TFDP1, MAFB, NCAPH2, CHD1, FOS, TEAD3, KDM6B, SUPT16H, ZNF3, RBM22, USF1, REST, HNRNPLL, AATF, SMC3, STAG1, TRP47, AGO1, FOXA2, TBL1X, PAF1, ZNF600, WT1, ZBTB33, KDM1A, YY1, RELA, SP140, ZNF143, AGO2, PLAG1, NCOA3, NR2F1, NEUROG2, KDM5B, TP53, ZNF334, MYOD1, EGR2, ARRB1, AR, RXR, HEXIM1, TFIIIC, HSF1, ZBTB26, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): PRMT2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops