- Basic information
- CohesinDB ID: CDBP00421637
- Locus: chr21-46664379-46664904
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 54%,
"5_TxWk": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, CBFA2T2, CHD8, SMC1A, FOSL1, ZNF263, MYCN, BRD1, POU2F2, ZFX, ZNF600, XBP1, CRY1, ZBTB48, WT1, STAT1, NFATC1, TET2, LEO1, BCL3, RELA, TAF15, ATF3, MYC, SP140, GABPA, TAL1, PBX3, TP63, FOS, AGO2, ZNF143, ZEB1, NR2F1, KDM5B, TP53, OCA2, SREBF2, CTCF, JUN, HSF1, BRD4, TCF3, CLOCK, MBD2, MAZ, ZNF554, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): PRMT2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 65
- Number of somatic mutations (non-coding): 10
- Related genes and loops