- Basic information
- CohesinDB ID: CDBP00421638
- Locus: chr21-46666370-46668508
-
Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE72082, ENCSR000BSB, GSE126634, GSE116868, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE105028, GSE131606, GSE25021, GSE115602, GSE165895, ENCSR000BTU, GSE67783, GSE86191, GSE138405, GSE76893, GSE101921, GSE152721, GSE206145-NatGen2015, GSE130135, ENCSR703TNG, ENCSR199XBQ, ENCSR895JMI, GSE118494, ENCSR338DUC, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000ECE, ENCSR247LSH, ENCSR620NWG, ENCSR767DFK, ENCSR495WGO, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR000BTQ, ENCSR167MTG, ENCSR853VWZ, GSE111913, ENCSR335RKQ, ENCSR054FKH, ENCSR153HNT, GSE68388, GSE50893, ENCSR748MVX
-
Cell type: GM10847, HSPC, HuCC-T1, H9-hESC, RPE, GM2630, Fibroblast, Ishikawa, IMR-90, K-562, GM18486, HFFc6, H1-hESC, GM18951, MB157, GM12891, SK-N-SH, RT-112, GM19099, HUES64, MCF-7, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, A-549, HCAEC, GM19238, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 18% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.678
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 21%,
"2_TssAFlnk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, FOXA1, HLF, RXRB, MLL4, KDM3A, HDGF, IKZF3, MORC2, PAX5, TEAD1, LMO2, OCA2, MED26, PITX3, ZNF561, SOX5, ZNF528, KMT2B, GATAD2A, JARID2, NANOG, POU5F1, ZNF263, CTBP1, ERF, STAT1, SAP130, ERG, ZBTB21, ZBTB8A, EZH1, SMARCA4, RFX1, RCOR1, NR2F6, CREB1, GABPB1, ZHX2, MIXL1, KLF17, GATA2, MXD3, FLI1, DRAP1, MXI1, RELB, HCFC1R1, RUNX1, CEBPA, NKX2-2, HDAC1, SP5, PRDM10, ZXDC, ZBTB10, FOXM1, SP2, SMARCB1, C11orf30, IKZF5, MBD2, ELL2, ETV4, NFATC3, CHD2, PAF1, WT1, NEUROD1, KLF4, BCL11B, ZFP69B, ZNF281, ZBTB6, EGR2, ELF3, RBM14, ARID4B, RXR, EGLN2, ZBTB26, HSF1, ZNF316, FOSL1, ZNF660, PBX2, ATF3, ZFP64, RUNX3, CBFB, TP63, JMJD1C, MAF, ELF1, RBM39, SNAI2, KLF10, CTCF, TAF3, JUN, ZBTB20, MNT, RYBP, DPF2, ZNF423, ZNF677, PDX1, RBPJ, TFAP2C, ZSCAN21, ZBTB17, ZBTB48, NONO, SRF, KDM4A, ZNF2, HOMEZ, PRDM14, MIER3, HNRNPH1, NR3C1, STAT5B, KMT2A, ZBTB11, KLF8, GRHL2, EBF3, ZBTB14, NFIL3, THAP11, EZH2phosphoT487, AFF4, SOX13, ZNF770, ZNF18, SP3, ARNT, BACH1, ZNF48, ZEB2, NCAPH2, MAFB, HMGXB4, TEAD3, ZXDB, KLF9, ZNF41, TBX5, USF1, BCL11A, TFAP2A, SP1, ZNF479, ASH2L, CTBP2, GLIS2, SMC3, STAG1, ZNF394, TRP47, AGO1, EBF1, MAFF, ZNF580, BCL3, KLF7, KDM1A, ZNF441, ZIC2, PCGF1, TAL1, NRIP1, ZNF143, AGO2, MTA1, TP53, ZSCAN22, ZNF140, PHF5A, BRD2, KAT8, EGR1, RB1, TFIIIC, RNF2, IKZF2, BRD4, JUND, ZSCAN23, PGR, PATZ1, LEO1, RING1B, TFAP4, CHD7, ZNF444, MXD4, ZNF189, SMARCE1, KLF6, SAP30, ESR1, ZNF217, ZNF524, KLF1, E2F6, GTF2F1, GLIS1, POU2F2, ZSCAN5A, ERG2, SP4, TBP, OGG1, ETS1, MYC, KLF12, NKX2-1, MCRS1, GABPA, STAT3, IKZF1, INO80, EZH2, ZNF652, MRTFA, PHF8, SPI1, HDAC2, ZNF182, GATAD2B, ZNF777, ZNF76, ETV5, BCL6, SIN3A, ZFP37, ERG3, RARA, NFYC, CREBBP, ZNF35, TAF15, SMAD4, ZNF518A, CDK8, ZEB1, SUPT16H, MAFK, REST, HNRNPLL, BCOR, FOXP1, AATF, CXXC4, PPARG, TBL1X, HDAC6, ZNF692, GTF2B, ZNF30, ZNF574, FOXO3, RELA, TARDBP, MAX, NEUROG2, NR2F1, KDM5B, TCF7L2, PKNOX1, MYOD1, T, AR, ZNF445, ZNF324, HEXIM1, DMAP1, AHR, MBD3, FOSL2, ZNF391, ZSCAN5C, MEIS2, SUZ12, RBFOX2, ZFHX2, INSM2, CTCFL, PRDM1, MECOM, ZNF736, ZNF629, ZNF506, KLF5, TRIM28, ETV1, RCOR2, TCF12, EP300, BAF155, GATA6, PRDM4, GLI4, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, BRD1, MYCN, RUNX1T1, GATAD1, ZNF341, RAD21, GRHL3, APC, XRCC5, ZNF614, ZNF639, ZNF750, FEZF1, TFE3, IRF1, ZGPAT, MRTFB, PTBP1, CBX1, SMC1A, SIRT6, ZNF335, ZFX, FIP1L1, SMAD3, RUNX2, CDK6, GATA4, OSR2, NRF1, FOS, CHD1, MED1, KDM6B, MYB, CEBPD, ZNF3, L3MBTL2, SETDB1, KLF16, ZBTB7A, PHIP, TCF3, FOXA2, RBBP5, MIER2, ZNF600, ZBTB33, CDK9, HOXB13, YY1, ZNF610, SP140, HIF1A, ZNF449, CEBPG, SP7, NR2F2, ZNF687, NFKBIZ, TAF1, ZBTB42, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): PRMT2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops