- Basic information
- CohesinDB ID: CDBP00421639
- Locus: chr21-46669397-46669669
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 45%,
"15_Quies": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, POU2F2, CHD8, MYCN, CRY1, SOX2, ZFX, ZNF600, XBP1, ZBTB17, ZBTB48, WT1, DUX4, TEAD4, ZNF770, ERG3, ZNF19, RELA, YY1, CREBBP, ZBTB8A, MYC, SP140, ZIC2, ZNF48, STAT3, TAL1, PRDM14, ZFP69B, CEBPB, TEAD3, KLF5, NR2F1, KDM5B, EZH2, CTCF, TCF12, BCL11A, MNT, ZNF257, ZNF182, MXD3, ILF3, TCF3, MAZ, SMC3, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): PRMT2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops