- Basic information
- CohesinDB ID: CDBP00413781
- Locus: chr21-16549809-16552371
-
Data sourse: GSE105004, GSE138405, GSE126634, ENCSR000EDE, GSE126990, GSE108869, ENCSR000ECS
-
Cell type: Hela-Kyoto, HeLa-S3, HeLa, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA2,SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 61%,
"5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, CHD1, RUNX1, CEBPG, CEBPB, CEBPA, TEAD4, FOXP1, FOXA1, PHOX2B, BRD2, NUP98-HOXA9, HOXB13, BAF155, ERG
- Target gene symbol (double-evidenced CRMs): NRIP1,BTG3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000180530,
ENSG00000154640,
- Related loop:
chr21:14975000-15000000~~chr21:16550000-16575000,
chr21:15000000-15025000~~chr21:16550000-16575000,
chr21:16075000-16100000~~chr21:16550000-16575000,
chr21:16175000-16200000~~chr21:16525000-16550000,
chr21:16175000-16200000~~chr21:16550000-16575000,
chr21:16400000-16425000~~chr21:16525000-16550000,
chr21:16450000-16475000~~chr21:16550000-16575000,
chr21:16550000-16575000~~chr21:17450000-17475000,
chr21:16550000-16575000~~chr21:17600000-17625000,