- Basic information
- CohesinDB ID: CDBP00413798
- Locus: chr21-16592201-16592905
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 61%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, CHD8, FOXA2, TOP2A, SOX2, SS18, NME2, ZSCAN16, SIN3A, ZBTB48, FOXA1, HOXB13, SMARCC1, RELA, OGG1, NFIC, SMAD2, SMARCA4, ISL1, CHD7, ARNT, GRHL3, PBX4, PRDM9, TAL1, MAX, PAX5, ZNF10, FOS, CDK8, CDX2, NR3C1, CEBPB, ELF1, PKNOX1, PITX3, PHOX2B, CTCF, NUP98-HOXA9, AR, GATA2, POU2F3, HOXA9, BRD4, PHIP, CTBP2, TEAD4, BRCA1
- Target gene symbol (double-evidenced CRMs): C21orf91
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000154642,
- Related loop:
chr21:16050000-16075000~~chr21:16575000-16600000,
chr21:16075000-16100000~~chr21:16575000-16600000,
chr21:16175000-16200000~~chr21:16575000-16600000,
chr21:16325000-16350000~~chr21:16575000-16600000,
chr21:16400000-16425000~~chr21:16575000-16600000,
chr21:16450000-16475000~~chr21:16575000-16600000,
chr21:16575000-16600000~~chr21:16825000-16850000,
chr21:16575000-16600000~~chr21:16850000-16875000,
chr21:16575000-16600000~~chr21:17800000-17825000,
chr21:16586568-16589020~~chr21:17044592-17046378,