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Basic information

CohesinDB ID: CDBP00413799

Locus: chr21-16595785-16596040

Data sourse: GSE206145-NatGen2015, GSE67783

Cell type: Fibroblast, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 40% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 77%, "5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: TRP47, CHD8, FOXA2, TOP2A, SOX2, SS18, NME2, ZSCAN16, SIN3A, ZBTB48, FOXA1, HOXB13, SMARCC1, RELA, OGG1, NFIC, SMAD2, SMARCA4, ISL1, CHD7, ARNT, GRHL3, PBX4, PRDM9, TAL1, MAX, PAX5, ZNF10, FOS, CDK8, CDX2, NR3C1, CEBPB, ELF1, PKNOX1, PITX3, PHOX2B, CTCF, NUP98-HOXA9, AR, GATA2, POU2F3, HOXA9, BRD4, PHIP, CTBP2, TEAD4, BRCA1

Target gene symbol (double-evidenced CRMs): C21orf91

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154642,

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Deatailed information for cohesin site CDBP00413799