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Basic information

CohesinDB ID: CDBP00413800

Locus: chr21-16597851-16598314

Data sourse: ENCSR198ZYJ

Cell type: Neurons-H1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 40% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 76%, "5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ISL1, TEAD4, HOXA9, PKNOX1, HIF1A, GATA3, PHOX2B, TBX2, EP300, HAND2

Target gene symbol (double-evidenced CRMs): C21orf91

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000154642,

Tools:

Assay

refGene

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Cohesin site CDBP00413800

CDBP00413800 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00413800

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